Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCB6_chr2_219204772_219223958	0/0	a0003	842	3	0	3	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0004	842	2	0	2	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/1	a0005	842	2	0	0	0	1	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0006	842	2	0	0	2	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0007	842	1	0	0	0	0	1	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0008	842	1	0	0	0	0	1	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0009	842	1	0	1	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0010	842	1	0	0	1	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0011	842	1	0	1	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0012	842	1	0	0	0	1	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0013	842	1	1	0	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	a0014	842	1	0	0	1	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB7_chrX_75046048_75161283	1/1	a0001	752	212	53	42	78	7	30	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	a0002	752	17	15	2	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	a0003	752	1	1	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	a0004	138	1	0	0	1	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	a0005	752	1	1	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB8_chr7_151023450_151052782	1/1	a0001	718	337	64	62	152	15	42	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0002	718	18	11	0	7	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0003	718	12	3	3	3	2	1	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0004	718	9	1	3	2	1	2	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0005	718	7	6	1	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0006	718	6	6	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0007	718	2	0	0	2	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0008	718	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0009	718	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0010	718	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0011	718	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0012	718	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0013	718	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0014	718	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0015	718	1	0	0	0	0	1	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	a0016	718	1	0	1	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB9_chr12_122923992_122971463	1/1	a0001	766	257	78	54	84	6	33	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	a0002	766	6	0	0	6	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	a0003	766	2	0	2	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	a0004	766	2	0	0	2	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	a0005	766	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	a0006	766	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	a0007	766	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	a0008	766	1	0	0	0	0	1	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	a0009	766	1	1	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCC10_chr6_43422541_43455427	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	1/1	a0001	1492	268	52	55	115	8	36	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0002	1492	50	27	9	7	1	6	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0003	1492	6	6	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0004	1492	6	6	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0005	1492	3	0	1	1	1	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0006	1492	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0007	1492	1	0	0	1	0	0	copy fasta	ABCC10	chr6	43422541	43455427