Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD66_chr6_46741933_46764506	1/1	a0001	196	361	61	69	169	16	44	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	a0002	196	34	25	9	0	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	a0003	196	2	2	0	0	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	a0004	196	2	0	0	2	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	a0005	196	1	0	1	0	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	a0006	196	1	0	1	0	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	a0007	196	1	0	0	1	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD6_chr6_89428152_89638821	0/1	a0001	727	115	21	23	43	10	17	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0002	727	73	21	13	30	2	7	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	1/0	a0003	727	22	14	4	1	0	2	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0004	727	17	6	2	7	0	2	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0005	727	17	0	8	6	2	1	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0006	727	7	0	0	7	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0007	727	4	4	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0008	727	2	2	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0009	727	2	0	0	0	0	2	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0010	727	2	2	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0011	727	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0012	727	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0013	727	1	0	0	0	0	1	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0014	727	1	1	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0015	727	1	1	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0016	727	1	0	1	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0017	727	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0018	727	1	0	1	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	a0019	727	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD7_chr7_118219704_118247732	1/1	a0001	254	400	91	62	191	14	40	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	a0002	254	2	2	0	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	a0003	18	1	0	0	1	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	a0004	254	1	0	1	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	a0005	254	1	1	0	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	a0006	38	1	0	1	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD9_chr14_102496767_102514776	1/1	a0001	317	383	88	70	159	18	46	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	a0002	317	2	0	0	2	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	a0003	317	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKS1A_chr6_34884255_35096406	0/1	a0001	1134	235	45	44	115	4	26	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0002	1136	62	12	4	41	2	3	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0003	1134	7	3	0	4	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	1/0	a0004	1134	3	2	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0005	1134	2	2	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0006	1134	2	0	2	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0007	1134	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0008	1136	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0009	1134	1	0	1	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0010	1134	1	0	1	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0011	1134	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0012	1134	1	0	0	0	0	1	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0013	1134	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0014	1134	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	a0015	1134	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406