JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAPK7_chr17_19373498_19388544	0/0	a0006	816	1	1	0	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	a0007	816	1	0	0	1	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	a0008	816	1	1	0	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	a0009	816	1	0	0	1	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK7_chr17_19373498_19388544	0/0	a0010	816	1	1	0	0	0	0	copy fasta	MAPK7	chr17	19373498	19388544
MAPK8IP1_chr11_45880651_45911465	1/1	a0001	711	382	94	77	143	18	48	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	a0002	711	3	2	1	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	a0003	711	2	0	0	2	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	a0004	711	1	0	1	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	a0005	707	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	a0006	711	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	a0007	711	1	0	1	0	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP1_chr11_45880651_45911465	0/0	a0008	711	1	0	0	1	0	0	copy fasta	MAPK8IP1	chr11	45880651	45911465
MAPK8IP2_chr22_50595793_50618978	0/0	a0001	824	409	84	78	190	13	44	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	a0002	824	11	0	4	0	1	6	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	a0003	673	9	0	0	9	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	a0004	824	3	0	0	3	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	a0005	824	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	a0006	824	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	a0007	824	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP2_chr22_50595793_50618978	0/0	a0008	824	1	0	0	1	0	0	copy fasta	MAPK8IP2	chr22	50595793	50618978
MAPK8IP3_chr16_1701195_1775351	1/1	a0001	1337	234	55	39	109	8	21	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	a0002	1337	92	27	23	30	0	12	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	a0003	207	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	a0004	1337	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	a0005	1337	1	0	0	0	0	1	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8IP3_chr16_1701195_1775351	0/0	a0006	1337	1	0	0	1	0	0	copy fasta	MAPK8IP3	chr16	1701195	1775351
MAPK8_chr10_48301677_48444360	1/1	a0001	427	305	92	50	127	10	24	copy fasta	MAPK8	chr10	48301677	48444360
MAPK8_chr10_48301677_48444360	0/0	a0002	427	1	0	0	1	0	0	copy fasta	MAPK8	chr10	48301677	48444360
MAPK9_chr5_180228143_180297083	1/1	a0001	424	371	90	68	151	16	44	copy fasta	MAPK9	chr5	180228143	180297083
MAPK9_chr5_180228143_180297083	0/0	a0002	424	1	0	0	1	0	0	copy fasta	MAPK9	chr5	180228143	180297083
MAPKAP1_chr9_125432394_125712208	1/1	a0001	522	298	76	53	119	12	36	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAP1_chr9_125432394_125712208	0/0	a0002	522	1	0	1	0	0	0	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAP1_chr9_125432394_125712208	0/0	a0003	522	1	0	0	1	0	0	copy fasta	MAPKAP1	chr9	125432394	125712208
MAPKAPK2_chr1_206679905_206739281	1/1	a0001	400	347	63	71	162	16	33	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	a0002	400	26	24	1	0	0	1	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	a0003	400	4	0	0	0	0	4	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	a0004	400	2	0	2	0	0	0	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	a0005	400	2	0	0	2	0	0	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK2_chr1_206679905_206739281	0/0	a0006	400	1	1	0	0	0	0	copy fasta	MAPKAPK2	chr1	206679905	206739281
MAPKAPK3_chr3_50612151_50654291	1/1	a0001	382	324	68	59	155	14	26	copy fasta	MAPKAPK3	chr3	50612151	50654291
MAPKAPK3_chr3_50612151_50654291	0/0	a0002	382	1	0	0	1	0	0	copy fasta	MAPKAPK3	chr3	50612151	50654291
MAPKAPK3_chr3_50612151_50654291	0/0	a0003	245	1	0	1	0	0	0	copy fasta	MAPKAPK3	chr3	50612151	50654291
MAPKAPK5_chr12_111837228_111907222	1/1	a0001	471	348	88	54	159	8	37	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	a0002	471	3	0	0	3	0	0	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKAPK5_chr12_111837228_111907222	0/0	a0003	471	1	0	0	0	0	1	copy fasta	MAPKAPK5	chr12	111837228	111907222
MAPKBP1_chr15_41769484_41832855	1/0	a0001	1508	165	50	34	62	3	15	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/1	a0002	1508	70	0	25	33	3	8	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0003	1508	68	27	10	14	6	11	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0004	1508	6	2	1	3	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855