JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAPKBP1_chr15_41769484_41832855	0/0	a0005	1508	2	2	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0006	1508	2	0	0	2	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0007	1508	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0008	1508	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0009	1508	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0010	1508	1	0	0	0	0	1	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0011	1508	1	0	1	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0012	1508	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0013	1508	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0014	1508	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0015	1508	1	0	1	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0016	1508	1	0	0	0	0	1	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0017	1508	1	0	0	0	0	1	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0018	1508	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0019	1508	1	1	0	0	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0020	1508	1	0	0	1	0	0	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPKBP1_chr15_41769484_41832855	0/0	a0021	1508	1	0	0	0	0	1	copy fasta	MAPKBP1	chr15	41769484	41832855
MAPRE1_chr20_32814954_32855405	1/1	a0001	268	385	96	72	159	12	44	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE1_chr20_32814954_32855405	0/0	a0002	268	1	0	0	1	0	0	copy fasta	MAPRE1	chr20	32814954	32855405
MAPRE2_chr18_35036413_35148470	1/1	a0001	327	369	86	64	176	8	33	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE2_chr18_35036413_35148470	0/0	a0002	327	1	0	0	0	0	1	copy fasta	MAPRE2	chr18	35036413	35148470
MAPRE3_chr2_26965637_27032219	1/1	a0001	281	258	86	50	86	14	20	copy fasta	MAPRE3	chr2	26965637	27032219
MAPT_chr17_45889554_46033334	0/0	a0001	833	123	42	28	34	8	11	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/1	a0002	833	69	4	17	38	1	8	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0003	833	21	2	8	1	4	6	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0004	833	13	12	1	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0005	833	6	2	2	0	1	1	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0006	833	6	1	4	1	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0007	833	4	4	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0008	833	3	3	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0009	833	2	2	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0010	833	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0011	833	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0012	833	1	0	1	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0013	833	1	0	1	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0014	833	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MAPT_chr17_45889554_46033334	0/0	a0015	833	1	1	0	0	0	0	copy fasta	MAPT	chr17	45889554	46033334
MARCHF10_chr17_62696314_62813314	1/0	a0001	808	186	46	33	78	4	24	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/1	a0002	808	67	14	18	19	4	11	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0003	808	3	2	1	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0004	808	3	0	0	3	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0005	808	3	3	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0006	808	2	1	1	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0007	808	2	1	1	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0008	808	2	2	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0009	808	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0010	808	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0011	808	1	0	0	0	0	1	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0012	808	1	0	0	1	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0013	808	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314