JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MARCHF10_chr17_62696314_62813314	0/0	a0014	808	1	0	0	1	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0015	808	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0016	808	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0017	808	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0018	808	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0019	808	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF10_chr17_62696314_62813314	0/0	a0020	808	1	1	0	0	0	0	copy fasta	MARCHF10	chr17	62696314	62813314
MARCHF11_chr5_16062139_16184791	1/1	a0001	402	294	84	48	122	12	26	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	a0002	402	2	0	0	2	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	a0003	402	1	0	0	1	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF11_chr5_16062139_16184791	0/0	a0004	402	1	0	0	1	0	0	copy fasta	MARCHF11	chr5	16062139	16184791
MARCHF1_chr4_163519718_164389019	0/0	a0001	545	87	44	12	24	0	7	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	a0002	545	14	4	1	8	0	1	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF1_chr4_163519718_164389019	0/0	a0003	545	1	0	1	0	0	0	copy fasta	MARCHF1	chr4	163519718	164389019
MARCHF2_chr19_8408305_8444017	1/1	a0001	246	284	82	42	123	7	28	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	a0002	246	85	3	26	38	7	11	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	a0003	246	17	2	6	0	2	7	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	a0004	246	5	5	0	0	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF2_chr19_8408305_8444017	0/0	a0005	246	1	0	0	1	0	0	copy fasta	MARCHF2	chr19	8408305	8444017
MARCHF3_chr5_126862714_127035558	1/1	a0001	253	295	80	41	128	8	36	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF3_chr5_126862714_127035558	0/0	a0002	253	1	0	1	0	0	0	copy fasta	MARCHF3	chr5	126862714	127035558
MARCHF4_chr2_216252865_216377483	1/1	a0001	410	324	95	54	137	8	28	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	a0002	410	3	3	0	0	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	a0003	410	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	a0004	410	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF4_chr2_216252865_216377483	0/0	a0005	410	1	0	0	1	0	0	copy fasta	MARCHF4	chr2	216252865	216377483
MARCHF5_chr10_92286167_92358964	1/1	a0001	278	305	74	62	116	14	37	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF5_chr10_92286167_92358964	0/0	a0002	278	1	0	0	0	0	1	copy fasta	MARCHF5	chr10	92286167	92358964
MARCHF6_chr5_10348695_10445388	1/1	a0001	910	283	82	56	109	6	28	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF6_chr5_10348695_10445388	0/0	a0002	910	1	0	0	1	0	0	copy fasta	MARCHF6	chr5	10348695	10445388
MARCHF7_chr2_159707506_159776027	1/0	a0001	704	295	70	49	145	10	20	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0002	704	28	0	0	28	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/1	a0003	704	11	0	5	4	0	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0004	704	9	3	1	0	3	2	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0005	704	8	0	7	0	1	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0006	704	6	3	0	2	0	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0007	704	1	1	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0008	704	1	0	0	0	0	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0009	704	1	1	0	0	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0010	704	1	0	0	0	0	1	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0011	704	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0012	704	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF7_chr2_159707506_159776027	0/0	a0013	704	1	0	0	1	0	0	copy fasta	MARCHF7	chr2	159707506	159776027
MARCHF8_chr10_45449585_45540371	1/0	a0001	573	206	45	37	93	8	22	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/1	a0002	573	75	14	27	16	4	13	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	a0003	573	31	2	0	24	3	2	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	a0004	573	29	13	5	11	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	a0005	573	1	1	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	a0006	573	1	0	0	0	1	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	a0007	573	1	1	0	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371