JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MARCHF8_chr10_45449585_45540371	0/0	a0008	573	1	0	0	1	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	a0009	573	1	0	1	0	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	a0010	573	1	0	0	1	0	0	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF8_chr10_45449585_45540371	0/0	a0011	573	1	0	0	0	0	1	copy fasta	MARCHF8	chr10	45449585	45540371
MARCHF9_chr12_57750103_57765411	1/1	a0001	346	356	92	69	137	14	42	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	a0002	346	1	0	1	0	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCHF9_chr12_57750103_57765411	0/0	a0003	346	1	0	0	1	0	0	copy fasta	MARCHF9	chr12	57750103	57765411
MARCKSL1_chr1_32328839_32341233	1/1	a0001	195	208	74	44	62	6	20	copy fasta	MARCKSL1	chr1	32328839	32341233
MARCKS_chr6_113852345_113868475	1/1	a0001	332	413	77	70	209	14	41	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	a0002	332	10	0	0	10	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	a0003	332	9	9	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	a0004	332	4	0	0	4	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	a0005	332	2	2	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	a0006	332	1	1	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	a0007	332	1	0	0	1	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	a0008	332	1	1	0	0	0	0	copy fasta	MARCKS	chr6	113852345	113868475
MARCKS_chr6_113852345_113868475	0/0	a0009	332	1	0	0	0	0	1	copy fasta	MARCKS	chr6	113852345	113868475
MARCOL_chr5_148233525_148248580	0/1	a0001	285	300	40	52	169	7	31	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	a0002	285	63	38	1	24	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	1/0	a0003	285	31	10	2	10	1	7	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	a0004	285	12	0	0	12	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	a0005	285	7	6	1	0	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	a0006	276	3	2	1	0	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	a0007	285	1	0	0	1	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCOL_chr5_148233525_148248580	0/0	a0008	285	1	0	1	0	0	0	copy fasta	MARCOL	chr5	148233525	148248580
MARCO_chr2_118937194_118999660	1/1	a0001	520	321	52	66	149	18	34	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	a0002	520	64	37	3	14	0	10	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	a0003	520	2	2	0	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	a0004	520	1	1	0	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	a0005	520	1	0	0	1	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	a0006	520	1	1	0	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	a0007	520	1	0	0	0	0	1	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	a0008	520	1	1	0	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	a0009	520	1	0	1	0	0	0	copy fasta	MARCO	chr2	118937194	118999660
MARCO_chr2_118937194_118999660	0/0	a0010	520	1	0	0	0	0	1	copy fasta	MARCO	chr2	118937194	118999660
MARF1_chr16_15589387_15648154	0/0	a0001	1742	375	85	74	165	15	36	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	a0002	1742	5	5	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	a0003	1742	4	0	0	2	1	1	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	a0004	1742	3	2	1	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	a0005	1742	1	0	1	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	a0006	1742	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/1	a0007	1742	1	0	0	0	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	a0008	1742	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	a0009	1742	1	0	0	1	0	0	copy fasta	MARF1	chr16	15589387	15648154
MARF1_chr16_15589387_15648154	0/0	a0010	1742	1	0	0	0	0	1	copy fasta	MARF1	chr16	15589387	15648154
MARK1_chr1_220523136_220669461	1/1	a0001	795	294	79	46	126	10	31	copy fasta	MARK1	chr1	220523136	220669461
MARK1_chr1_220523136_220669461	0/0	a0002	795	4	3	0	0	0	1	copy fasta	MARK1	chr1	220523136	220669461
MARK2_chr11_63834110_63916020	0/0	a0001	788	230	88	50	46	14	32	copy fasta	MARK2	chr11	63834110	63916020
MARK2_chr11_63834110_63916020	0/0	a0002	788	2	0	2	0	0	0	copy fasta	MARK2	chr11	63834110	63916020
MARK3_chr14_103380415_103508831	1/1	a0001	753	325	56	66	150	12	39	copy fasta	MARK3	chr14	103380415	103508831