JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MARK3_chr14_103380415_103508831	0/0	a0002	753	16	15	1	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	a0003	753	1	0	0	1	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	a0004	753	1	0	0	0	0	1	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	a0005	753	1	0	1	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	a0006	753	1	1	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	a0007	753	1	1	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	a0008	753	1	0	0	1	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK3_chr14_103380415_103508831	0/0	a0009	753	1	1	0	0	0	0	copy fasta	MARK3	chr14	103380415	103508831
MARK4_chr19_45246271_45310284	1/1	a0001	752	256	89	49	67	14	35	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	a0002	752	1	1	0	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	a0003	752	1	0	0	0	0	1	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	a0004	752	1	0	1	0	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARK4_chr19_45246271_45310284	0/0	a0005	752	1	0	0	1	0	0	copy fasta	MARK4	chr19	45246271	45310284
MARS1_chr12_57483068_57521652	1/1	a0001	900	276	76	48	106	10	34	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	a0002	900	3	3	0	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	a0003	900	2	0	0	2	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	a0004	900	1	0	0	1	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	a0005	900	1	1	0	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	a0006	900	1	0	0	1	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	a0007	900	1	0	1	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	a0008	900	1	0	0	1	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	a0009	900	1	0	1	0	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS1_chr12_57483068_57521652	0/0	a0010	900	1	0	0	1	0	0	copy fasta	MARS1	chr12	57483068	57521652
MARS2_chr2_197700369_197713395	1/0	a0001	593	371	72	66	178	16	38	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	a0002	593	4	0	4	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	a0003	593	2	0	0	2	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	a0004	593	1	0	0	1	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	a0005	593	1	0	0	0	0	1	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	a0006	593	1	0	0	0	0	1	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/0	a0007	593	1	0	0	1	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARS2_chr2_197700369_197713395	0/1	a0008	593	1	0	0	0	0	0	copy fasta	MARS2	chr2	197700369	197713395
MARVELD1_chr10_97708730_97723150	1/1	a0001	173	427	96	74	191	18	46	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD1_chr10_97708730_97723150	0/0	a0002	173	1	0	0	1	0	0	copy fasta	MARVELD1	chr10	97708730	97723150
MARVELD2_chr5_69410116_69449330	0/0	a0001	558	193	58	30	83	5	17	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/1	a0002	558	147	22	28	79	3	14	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	a0003	558	1	0	0	0	0	1	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	a0004	558	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	a0005	558	1	0	0	1	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	a0006	558	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD2_chr5_69410116_69449330	0/0	a0007	558	1	1	0	0	0	0	copy fasta	MARVELD2	chr5	69410116	69449330
MARVELD3_chr16_71621184_71641465	0/0	a0001	401	162	21	28	94	5	14	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	1/0	a0002	401	153	46	31	50	4	21	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/1	a0003	401	58	24	14	8	4	7	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	a0004	401	3	3	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	a0005	401	1	1	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	a0006	401	1	0	1	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	a0007	401	1	0	0	0	1	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	a0008	401	1	0	0	1	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	a0009	401	1	0	0	1	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	a0010	401	1	0	0	1	0	0	copy fasta	MARVELD3	chr16	71621184	71641465