JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MARVELD3_chr16_71621184_71641465	0/0	a0011	401	1	0	0	1	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MARVELD3_chr16_71621184_71641465	0/0	a0012	401	1	1	0	0	0	0	copy fasta	MARVELD3	chr16	71621184	71641465
MAS1L_chr6_29481697_29492956	0/1	a0001	378	376	77	71	181	11	35	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0002	378	29	6	2	19	0	2	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0003	378	5	4	1	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0004	378	3	0	0	3	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0005	378	3	3	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0006	378	3	3	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0007	378	2	0	0	1	0	1	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0008	378	2	0	0	0	0	2	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0009	378	1	0	1	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0010	378	1	0	1	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0011	378	1	1	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0012	378	1	0	0	0	1	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0013	378	1	0	0	1	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0014	378	1	1	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0015	378	1	1	0	0	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1L_chr6_29481697_29492956	0/0	a0016	378	1	0	0	1	0	0	copy fasta	MAS1L	chr6	29481697	29492956
MAS1_chr6_159885988_159922447	1/1	a0001	325	348	96	72	126	14	38	copy fasta	MAS1	chr6	159885988	159922447
MASP1_chr3_187212282_187296737	1/1	a0001	699	365	77	54	172	13	47	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	a0002	699	10	10	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	a0003	699	3	0	0	3	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	a0004	699	1	0	0	0	1	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	a0005	699	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	a0006	699	1	1	0	0	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	a0007	699	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	a0008	699	1	0	0	0	0	1	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187212282_187296737	0/0	a0009	699	1	0	0	1	0	0	copy fasta	MASP1	chr3	187212282	187296737
MASP1_chr3_187229082_187296737	1/0	a0001	728	370	74	55	183	12	45	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/1	a0002	728	17	12	0	0	1	3	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	a0003	728	3	0	0	3	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	a0004	728	3	3	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	a0005	728	2	0	0	2	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	a0006	728	1	0	0	0	1	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	a0007	728	1	1	0	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	a0008	728	1	0	1	0	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	a0009	728	1	0	0	1	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP1_chr3_187229082_187296737	0/0	a0010	728	1	0	0	1	0	0	copy fasta	MASP1	chr3	187229082	187296737
MASP2_chr1_11021523_11052239	0/1	a0001	686	171	20	46	72	5	27	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	1/0	a0002	686	82	36	13	22	0	10	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0003	686	53	15	3	28	1	6	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0004	686	9	8	1	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0005	686	6	6	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0006	686	5	0	0	5	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0007	686	4	0	0	4	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0008	686	2	2	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0009	686	2	2	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0010	686	2	2	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0011	686	2	2	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0012	686	2	1	1	0	0	0	copy fasta	MASP2	chr1	11021523	11052239