JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MASP2_chr1_11021523_11052239	0/0	a0013	686	2	0	2	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0014	686	1	1	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0015	686	1	0	0	1	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0016	686	1	1	0	0	0	0	copy fasta	MASP2	chr1	11021523	11052239
MASP2_chr1_11021523_11052239	0/0	a0017	686	1	0	0	0	0	1	copy fasta	MASP2	chr1	11021523	11052239
MAST1_chr19_12833515_12879952	1/1	a0001	1570	311	87	62	120	10	30	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	a0002	1570	1	0	0	1	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	a0003	1570	1	1	0	0	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	a0004	1570	1	0	0	1	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	a0005	1570	1	0	0	1	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST1_chr19_12833515_12879952	0/0	a0006	1570	1	0	0	1	0	0	copy fasta	MAST1	chr19	12833515	12879952
MAST2_chr1_45798612_46041122	0/0	a0001	1798	105	27	16	45	4	13	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0002	1798	87	38	18	23	2	6	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0003	1798	25	0	3	19	0	3	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	1/0	a0004	1798	21	8	10	0	0	2	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/1	a0005	1798	9	0	3	0	3	2	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0006	1798	9	0	0	9	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0007	1798	6	0	5	0	1	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0008	1798	4	1	2	0	1	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0009	1798	3	0	0	3	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0010	1798	3	3	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0011	1798	2	0	0	0	0	2	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0012	1798	2	0	0	2	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0013	1798	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0014	1798	1	0	0	0	1	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0015	1798	1	0	0	0	0	1	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0016	1798	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0017	1798	1	0	1	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0018	1798	1	0	0	0	0	1	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0019	1798	1	0	1	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0020	1798	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0021	1798	1	0	1	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0022	1798	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0023	1798	1	1	0	0	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST2_chr1_45798612_46041122	0/0	a0024	1798	1	0	0	1	0	0	copy fasta	MAST2	chr1	45798612	46041122
MAST3_chr19_18092778_18156687	0/0	a0000	0	1	0	1	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	1/1	a0001	1347	152	62	24	49	6	9	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	a0002	1347	122	21	23	57	4	17	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	a0003	1347	14	0	8	4	0	2	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	a0004	1347	2	0	2	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	a0005	1347	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	a0006	1347	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	a0007	1347	1	1	0	0	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	a0008	1347	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST3_chr19_18092778_18156687	0/0	a0009	1347	1	0	0	1	0	0	copy fasta	MAST3	chr19	18092778	18156687
MAST4_chr5_66591393_67174593	0/0	a0001	2623	57	35	8	8	0	6	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0002	2623	9	9	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0003	2624	8	1	2	0	2	3	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0004	2623	8	8	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	1/0	a0005	2623	5	1	2	0	0	1	copy fasta	MAST4	chr5	66591393	67174593