JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAST4_chr5_66591393_67174593	0/0	a0006	2623	4	4	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0007	2623	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0008	2623	2	2	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0009	2623	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0010	2623	1	0	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0011	2623	1	0	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0012	2623	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0013	2618	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0014	2623	1	0	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0015	2623	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0016	2623	1	0	1	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/1	a0017	2623	1	0	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0018	2623	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0019	2623	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0020	2624	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MAST4_chr5_66591393_67174593	0/0	a0021	2623	1	1	0	0	0	0	copy fasta	MAST4	chr5	66591393	67174593
MASTL_chr10_27150352_27192953	1/1	a0001	879	290	80	70	110	8	20	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0002	879	73	10	2	53	2	6	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0003	879	24	0	0	24	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0004	879	2	0	1	0	0	1	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0005	879	2	0	2	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0006	879	1	0	0	1	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0007	879	1	0	1	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0008	879	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0009	879	1	0	0	1	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0010	879	1	0	0	1	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0011	879	1	1	0	0	0	0	copy fasta	MASTL	chr10	27150352	27192953
MASTL_chr10_27150352_27192953	0/0	a0012	879	1	0	0	0	0	1	copy fasta	MASTL	chr10	27150352	27192953
MAT1A_chr10_80266820_80294658	1/1	a0001	395	369	92	79	132	16	48	copy fasta	MAT1A	chr10	80266820	80294658
MAT1A_chr10_80266820_80294658	0/0	a0002	395	3	0	1	2	0	0	copy fasta	MAT1A	chr10	80266820	80294658
MAT2A_chr2_85534168_85550281	1/1	a0001	395	417	90	76	183	18	48	copy fasta	MAT2A	chr2	85534168	85550281
MAT2A_chr2_85534168_85550281	0/0	a0002	314	1	0	0	1	0	0	copy fasta	MAT2A	chr2	85534168	85550281
MAT2B_chr5_163500619_163524354	1/1	a0001	334	365	94	74	137	14	44	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	a0002	334	3	0	0	3	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	a0003	334	1	0	1	0	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MAT2B_chr5_163500619_163524354	0/0	a0004	247	1	0	1	0	0	0	copy fasta	MAT2B	chr5	163500619	163524354
MATCAP1_chr16_67170599_67188963	1/1	a0001	471	253	81	52	77	12	29	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	a0002	471	35	0	4	31	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	a0003	471	19	15	1	0	0	3	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP1_chr16_67170599_67188963	0/0	a0004	471	1	0	1	0	0	0	copy fasta	MATCAP1	chr16	67170599	67188963
MATCAP2_chr7_36319152_36372240	1/1	a0001	517	383	87	67	179	14	34	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	a0002	517	3	0	0	3	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	a0003	517	1	1	0	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATCAP2_chr7_36319152_36372240	0/0	a0004	517	1	0	1	0	0	0	copy fasta	MATCAP2	chr7	36319152	36372240
MATK_chr19_3772973_3791381	1/1	a0001	507	414	92	75	187	13	45	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	a0002	181	15	6	1	6	0	2	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	a0003	507	3	0	1	0	1	1	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	a0004	507	1	0	0	1	0	0	copy fasta	MATK	chr19	3772973	3791381
MATK_chr19_3772973_3791381	0/0	a0005	507	1	0	1	0	0	0	copy fasta	MATK	chr19	3772973	3791381
MATN1_chr1_30706277_30728585	1/1	a0001	496	431	94	78	196	14	47	copy fasta	MATN1	chr1	30706277	30728585