JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MATN1_chr1_30706277_30728585	0/0	a0002	496	3	0	0	3	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	a0003	496	3	3	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	a0004	496	1	1	0	0	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	a0005	496	1	0	0	0	0	1	copy fasta	MATN1	chr1	30706277	30728585
MATN1_chr1_30706277_30728585	0/0	a0006	496	1	0	0	1	0	0	copy fasta	MATN1	chr1	30706277	30728585
MATN2_chr8_97864064_98041724	1/0	a0001	956	162	37	22	81	4	17	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/1	a0002	956	57	20	18	7	8	3	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0003	956	34	7	3	22	0	2	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0004	956	21	0	6	12	2	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0005	956	5	0	0	5	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0006	956	4	4	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0007	956	4	0	0	1	0	3	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0008	956	4	4	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0009	956	3	0	0	0	1	2	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0010	956	2	0	0	0	1	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0011	956	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0012	956	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0013	956	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0014	956	2	2	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0015	956	1	0	0	1	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0016	956	1	0	0	0	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0017	956	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0018	956	1	0	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0019	956	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0020	956	1	0	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0021	956	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0022	956	1	0	0	0	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0023	956	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0024	956	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0025	956	1	0	0	1	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0026	956	1	0	0	0	0	1	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0027	956	1	1	0	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN2_chr8_97864064_98041724	0/0	a0028	956	1	0	1	0	0	0	copy fasta	MATN2	chr8	97864064	98041724
MATN3_chr2_19987052_20017668	1/1	a0001	486	415	92	76	188	15	42	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	a0002	486	6	3	1	1	0	1	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	a0003	486	5	0	2	0	2	1	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	a0004	486	2	0	0	2	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	a0005	486	1	0	1	0	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	a0006	486	1	0	0	1	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	a0007	486	1	0	0	0	1	0	copy fasta	MATN3	chr2	19987052	20017668
MATN3_chr2_19987052_20017668	0/0	a0008	486	1	1	0	0	0	0	copy fasta	MATN3	chr2	19987052	20017668
MATN4_chr20_45288450_45313299	0/0	a0001	581	179	12	24	116	8	19	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	1/1	a0002	581	111	39	24	27	6	13	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0003	581	87	21	24	34	2	6	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0004	581	16	14	2	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0005	581	8	0	0	8	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0006	581	6	5	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0007	581	3	2	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0008	581	2	2	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0009	581	1	0	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299