Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKS1B_chr12_98738974_99989936	1/0	a0001	1285	42	30	7	0	0	4	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	a0002	1285	3	3	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	a0003	1285	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	a0004	1285	1	0	1	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/1	a0005	1285	1	0	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS3_chr16_4691511_4739271	1/1	a0001	656	172	56	19	66	6	23	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0002	656	160	9	42	86	10	13	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0003	656	18	17	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0004	656	7	1	4	1	0	1	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0005	656	3	0	2	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0006	656	2	2	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0007	656	2	0	0	2	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0008	656	2	0	2	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0009	656	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0010	656	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0011	656	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0012	656	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0013	656	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0014	656	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0015	656	1	0	1	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	a0016	656	1	0	0	0	0	1	copy fasta	ANKS3	chr16	4691511	4739271
ANKS4B_chr16_21228699_21258850	1/1	a0001	417	413	74	73	200	14	50	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	a0002	417	8	8	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	a0003	417	3	0	3	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	a0004	417	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	a0005	417	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS6_chr9_98727009_98801555	0/1	a0001	871	267	70	48	109	9	30	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	1/0	a0002	871	60	3	12	37	1	6	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	a0003	871	4	0	0	4	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	a0004	871	4	1	0	3	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	a0005	871	3	3	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	a0006	871	3	0	0	3	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	a0007	871	2	1	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	a0008	871	1	1	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	a0009	871	1	1	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	a0010	871	1	0	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	a0011	871	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	a0012	871	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKUB1_chr3_149756100_149797554	1/1	a0001	544	233	59	40	98	9	25	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0002	544	87	17	20	32	5	13	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0003	544	26	3	2	21	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0004	544	7	6	1	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0005	544	4	3	1	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0006	544	3	3	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0007	544	2	0	2	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0008	544	1	0	1	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0009	544	1	0	0	1	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0010	544	1	0	0	0	0	1	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0011	441	1	0	0	0	0	1	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0012	544	1	0	0	1	0	0	copy fasta	ANKUB1	chr3	149756100	149797554