JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MBD1_chr18_50263846_50286523	0/0	a0002	605	78	13	12	38	5	10	copy fasta	MBD1	chr18	50263846	50286523
MBD1_chr18_50263846_50286523	0/0	a0003	605	1	0	1	0	0	0	copy fasta	MBD1	chr18	50263846	50286523
MBD2_chr18_54146606_54229669	1/1	a0001	411	267	76	51	99	9	30	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	a0002	412	25	3	7	7	4	4	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	a0003	412	7	7	0	0	0	0	copy fasta	MBD2	chr18	54146606	54229669
MBD2_chr18_54146606_54229669	0/0	a0004	418	1	0	0	0	1	0	copy fasta	MBD2	chr18	54146606	54229669
MBD3L1_chr19_8827377_8848319	0/1	a0001	194	361	78	75	158	12	37	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L1_chr19_8827377_8848319	1/0	a0002	194	53	19	7	20	0	6	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L1_chr19_8827377_8848319	0/0	a0003	194	12	0	0	11	0	1	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L1_chr19_8827377_8848319	0/0	a0004	194	1	1	0	0	0	0	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L1_chr19_8827377_8848319	0/0	a0005	198	1	0	0	1	0	0	copy fasta	MBD3L1	chr19	8827377	8848319
MBD3L2B_chr19_7013969_7026431	0/0	a0001	204	211	29	48	96	9	29	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	a0002	204	125	35	17	56	8	9	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	a0003	204	5	0	3	0	1	1	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	a0004	204	3	3	0	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	a0005	204	1	0	1	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	a0006	204	1	0	0	1	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	a0007	204	1	0	0	0	0	1	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	a0008	204	1	0	0	1	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	a0009	204	1	1	0	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2B_chr19_7013969_7026431	0/0	a0010	204	1	0	1	0	0	0	copy fasta	MBD3L2B	chr19	7013969	7026431
MBD3L2_chr19_7044321_7056735	0/1	a0001	208	146	17	35	64	2	27	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	1/0	a0002	208	101	20	16	52	3	9	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	a0003	208	3	3	0	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	a0004	208	3	0	0	3	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	a0005	208	1	0	1	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	a0006	208	1	0	0	0	1	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	a0007	208	1	0	0	1	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	a0008	208	1	1	0	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L2_chr19_7044321_7056735	0/0	a0009	208	1	1	0	0	0	0	copy fasta	MBD3L2	chr19	7044321	7056735
MBD3L3_chr19_7051207_7063676	0/0	a0000	0	3	0	0	2	1	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	a0001	208	122	8	26	67	2	19	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	a0002	208	116	30	16	51	8	11	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	a0003	208	32	4	12	6	2	8	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	a0004	208	7	0	3	4	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	a0005	208	2	0	1	0	1	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	a0006	208	2	0	0	2	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	a0007	208	1	0	0	1	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	a0008	208	1	0	0	1	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	a0009	208	1	0	0	1	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L3_chr19_7051207_7063676	0/0	a0010	208	1	0	0	1	0	0	copy fasta	MBD3L3	chr19	7051207	7063676
MBD3L4_chr19_7032749_7045179	0/0	a0000	0	2	1	1	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0001	208	116	20	30	43	6	17	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0002	208	78	12	9	43	1	13	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0003	208	37	3	12	16	4	2	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0004	208	10	2	1	5	0	2	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0005	208	6	2	2	1	1	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0006	208	4	0	0	2	0	2	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0007	208	3	2	1	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0008	208	2	0	0	2	0	0	copy fasta	MBD3L4	chr19	7032749	7045179