JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MBD3L4_chr19_7032749_7045179	0/0	a0009	208	1	1	0	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0010	208	1	1	0	0	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0011	208	1	0	0	1	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L4_chr19_7032749_7045179	0/0	a0012	34	1	0	0	1	0	0	copy fasta	MBD3L4	chr19	7032749	7045179
MBD3L5_chr19_7025578_7038011	0/0	a0001	208	97	16	20	42	4	15	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0002	208	79	17	11	42	1	8	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	1/0	a0003	208	32	1	10	15	4	1	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0004	208	17	7	4	5	0	1	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0005	208	6	4	2	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0006	208	6	0	0	5	0	1	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0007	208	3	0	0	3	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0008	208	3	0	0	1	0	2	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0009	208	2	0	0	1	1	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0010	208	1	1	0	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0011	208	1	1	0	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0012	208	1	1	0	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3L5_chr19_7025578_7038011	0/0	a0013	208	1	0	1	0	0	0	copy fasta	MBD3L5	chr19	7025578	7038011
MBD3_chr19_1568596_1597865	1/1	a0001	291	399	88	85	168	16	40	copy fasta	MBD3	chr19	1568596	1597865
MBD3_chr19_1568596_1597865	0/0	a0002	291	1	0	1	0	0	0	copy fasta	MBD3	chr19	1568596	1597865
MBD4_chr3_129425947_129444948	1/0	a0001	574	279	73	59	102	12	32	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0002	574	73	2	12	55	0	4	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/1	a0003	574	29	9	6	6	2	5	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0004	574	21	11	2	3	0	5	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0005	574	1	0	0	1	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0006	574	1	0	1	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0007	574	1	0	0	0	0	1	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0008	574	1	0	1	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0009	574	1	1	0	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0010	574	1	0	0	0	0	1	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0011	574	1	0	0	1	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0012	574	1	0	1	0	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0013	574	1	0	0	1	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD4_chr3_129425947_129444948	0/0	a0014	574	1	0	0	1	0	0	copy fasta	MBD4	chr3	129425947	129444948
MBD5_chr2_148016091_148521971	1/1	a0001	1727	182	69	32	51	8	20	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	a0002	1727	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	a0003	1727	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	a0004	1727	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	a0005	1727	1	0	0	0	0	1	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	a0006	1727	1	1	0	0	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD5_chr2_148016091_148521971	0/0	a0007	1502	1	0	0	1	0	0	copy fasta	MBD5	chr2	148016091	148521971
MBD6_chr12_57517824_57535148	1/1	a0001	1003	320	82	57	135	10	34	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	a0002	1003	9	0	0	9	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	a0003	1003	3	3	0	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	a0004	1003	2	2	0	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	a0005	1003	1	1	0	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	a0006	1003	1	0	0	1	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	a0007	1003	1	0	0	0	0	1	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	a0008	1003	1	0	0	1	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	a0009	1003	1	0	1	0	0	0	copy fasta	MBD6	chr12	57517824	57535148
MBD6_chr12_57517824_57535148	0/0	a0010	1003	1	0	0	0	0	1	copy fasta	MBD6	chr12	57517824	57535148