JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MBOAT7_chr19_54168415_54194580	0/0	a0002	294	33	7	10	14	0	2	copy fasta	MBOAT7	chr19	54168415	54194580
MBP_chr18_76973833_77137783	1/1	a0001	304	378	86	70	168	14	38	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	a0002	304	7	0	0	3	0	4	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	a0003	304	5	5	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	a0004	304	2	0	0	2	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	a0005	304	2	1	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	a0006	304	1	0	0	1	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	a0007	128	1	0	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBTD1_chr17_51172425_51265049	1/1	a0001	628	340	92	74	128	14	30	copy fasta	MBTD1	chr17	51172425	51265049
MBTPS1_chr16_84048763_84121942	1/1	a0001	1052	412	88	73	194	16	39	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0002	1052	2	2	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0003	1052	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0004	146	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0005	1052	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0006	1052	1	0	1	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0007	1052	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0008	1052	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0009	1052	1	1	0	0	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0010	1052	1	0	0	0	0	1	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0011	1052	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS1_chr16_84048763_84121942	0/0	a0012	1052	1	0	0	1	0	0	copy fasta	MBTPS1	chr16	84048763	84121942
MBTPS2_chrX_21834617_21890423	1/1	a0001	519	305	73	46	145	9	30	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	a0002	432	1	0	0	1	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	a0003	519	1	0	0	1	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MBTPS2_chrX_21834617_21890423	0/0	a0004	519	1	1	0	0	0	0	copy fasta	MBTPS2	chrX	21834617	21890423
MB_chr22_35601764_35622329	1/1	a0001	154	376	80	66	166	16	46	copy fasta	MB	chr22	35601764	35622329
MC1R_chr16_89913862_89925972	1/0	a0001	317	212	93	49	21	11	37	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0002	317	122	1	22	92	1	6	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0003	317	35	0	1	32	1	1	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0004	317	10	1	7	0	2	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/1	a0005	317	6	0	0	5	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0006	317	2	2	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0007	317	1	1	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0008	317	1	0	0	1	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0009	317	1	0	1	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0010	317	1	1	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0011	317	1	1	0	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0012	317	1	0	0	1	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0013	317	1	0	1	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0014	317	1	0	1	0	0	0	copy fasta	MC1R	chr16	89913862	89925972
MC1R_chr16_89913862_89925972	0/0	a0015	317	1	0	0	0	1	0	copy fasta	MC1R	chr16	89913862	89925972
MC2R_chr18_13877044_13920536	1/1	a0001	297	403	83	70	186	16	46	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	a0002	297	7	5	2	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	a0003	297	3	3	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	a0004	297	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	a0005	250	1	0	0	1	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC2R_chr18_13877044_13920536	0/0	a0006	297	1	1	0	0	0	0	copy fasta	MC2R	chr18	13877044	13920536
MC3R_chr20_56243732_56254815	1/1	a0001	323	340	48	74	158	15	43	copy fasta	MC3R	chr20	56243732	56254815
MC3R_chr20_56243732_56254815	0/0	a0002	323	119	52	6	51	3	7	copy fasta	MC3R	chr20	56243732	56254815
MC3R_chr20_56243732_56254815	0/0	a0003	323	1	0	0	1	0	0	copy fasta	MC3R	chr20	56243732	56254815