JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MCCD1_chr6_31523962_31535232	0/0	a0004	119	7	6	1	0	0	0	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	a0005	119	4	2	2	0	0	0	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	a0006	119	1	0	0	1	0	0	copy fasta	MCCD1	chr6	31523962	31535232
MCC_chr5_113017106_113493453	0/0	a0001	1019	77	45	15	15	1	1	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	a0002	1020	41	2	8	25	4	2	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/1	a0003	1019	28	14	3	7	0	3	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	a0004	1023	5	0	1	3	0	1	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	1/0	a0005	1019	3	1	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	a0006	1020	1	0	0	0	1	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	a0007	1019	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	a0008	1023	1	0	0	0	0	1	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	a0009	1019	1	0	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	a0010	1019	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	a0011	1019	1	0	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCEE_chr2_71104687_71135229	1/0	a0001	176	271	68	47	124	6	25	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	a0002	176	84	23	14	40	2	5	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/1	a0003	176	44	2	14	12	4	11	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	a0004	176	10	5	1	3	0	1	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	a0005	176	4	0	0	0	0	4	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	a0006	176	2	0	0	2	0	0	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	a0007	176	2	0	2	0	0	0	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	a0008	176	1	0	0	1	0	0	copy fasta	MCEE	chr2	71104687	71135229
MCEMP1_chr19_7672090_7684829	1/1	a0001	174	393	77	77	178	16	43	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	a0002	174	39	11	5	18	2	3	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	a0003	174	10	9	1	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	a0004	174	1	0	0	1	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	a0005	120	1	0	0	1	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	a0006	174	1	1	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	a0007	174	1	0	1	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	a0008	174	1	1	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	a0009	169	1	1	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCF2L2_chr3_183173041_183433619	0/1	a0001	1114	53	11	16	15	1	9	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0002	1114	27	6	3	15	1	2	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0003	1114	17	3	6	7	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0004	1114	12	7	1	4	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0005	1114	7	2	1	4	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0006	1114	7	3	0	4	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0007	1114	7	6	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	1/0	a0008	1114	6	4	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0009	1114	5	4	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0010	1114	4	2	2	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0011	1114	3	1	0	2	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0012	1114	3	0	2	0	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0013	1114	3	2	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0014	1114	3	3	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0015	1114	2	0	0	2	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0016	1114	2	2	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0017	1114	2	2	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0018	1114	1	0	0	0	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0019	1114	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619