JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MCF2L2_chr3_183173041_183433619	0/0	a0020	1114	1	0	0	1	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0021	1114	1	0	0	1	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0022	1114	1	0	0	1	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0023	1114	1	0	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0024	1114	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0025	1114	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0026	1114	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0027	1114	1	0	0	0	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0028	1114	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0029	1114	1	0	0	0	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	a0030	1114	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L_chr13_112964214_113104742	1/1	a0001	1125	106	29	34	17	8	16	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	a0002	1125	6	0	4	2	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	a0003	1125	2	0	2	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	a0004	1125	1	0	0	1	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	a0005	1125	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2_chrX_139576770_139713167	1/1	a0001	1001	243	67	44	101	7	22	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	a0002	1001	3	3	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	a0003	1002	1	0	0	1	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	a0004	1001	1	1	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	a0005	1001	1	1	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCFD2_chr2_46896874_46920806	1/1	a0001	146	410	93	74	178	17	46	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	a0002	146	1	1	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	a0003	146	1	0	0	0	1	0	copy fasta	MCFD2	chr2	46896874	46920806
MCHR1_chr22_40674484_40687812	1/1	a0001	353	390	89	74	157	18	50	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	a0002	353	8	7	1	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	a0003	353	3	0	0	3	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	a0004	353	3	0	0	3	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	a0005	353	1	0	0	1	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	a0006	353	1	0	1	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR2_chr6_99913519_99999223	1/1	a0001	340	314	92	67	103	14	36	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	a0002	340	1	0	1	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	a0003	340	1	0	0	1	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCIDAS_chr5_55214564_55232315	1/1	a0001	385	381	88	72	165	14	40	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	a0002	385	2	0	0	0	0	2	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	a0003	385	2	2	0	0	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	a0004	385	1	0	0	1	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCL1_chr1_150569558_150584610	1/1	a0001	350	409	95	68	179	18	47	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	a0002	350	1	1	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	a0003	350	1	0	0	0	0	1	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	a0004	350	1	0	0	1	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCM10_chr10_13156558_13216110	1/1	a0001	874	342	81	58	156	10	35	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0002	874	40	1	9	18	6	6	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0003	874	9	0	2	4	1	2	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0004	874	9	0	8	0	0	1	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0005	874	7	5	2	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0006	874	3	0	3	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0007	874	2	0	0	2	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0008	874	2	0	0	0	0	2	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0009	874	2	0	0	0	1	1	copy fasta	MCM10	chr10	13156558	13216110