JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MCM10_chr10_13156558_13216110	0/0	a0010	874	2	2	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0011	874	2	0	0	2	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0012	874	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0013	874	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0014	874	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0015	874	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0016	874	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0017	874	1	0	1	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0018	874	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0019	874	1	0	0	0	0	1	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0020	874	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0021	874	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0022	874	1	0	1	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	a0023	874	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM2_chr3_127593411_127627436	1/1	a0001	904	396	87	74	172	16	45	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	a0002	904	11	7	4	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	a0003	904	4	0	0	4	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	a0004	904	4	0	0	4	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	a0005	904	3	0	0	2	0	1	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	a0006	904	3	3	0	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	a0007	904	1	0	0	1	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	a0008	904	1	0	0	0	1	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	a0009	904	1	0	0	0	1	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	a0010	904	1	1	0	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	a0011	904	1	0	0	1	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM3AP_chr21_46230133_46290611	1/0	a0001	1980	252	70	46	100	12	23	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/1	a0002	1980	72	15	19	20	3	14	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0003	1980	5	1	3	0	1	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0004	1980	4	3	1	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0005	1980	4	0	0	4	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0006	1980	3	2	1	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0007	1980	3	0	0	3	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0008	1980	2	0	0	0	0	2	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0009	1980	2	0	0	2	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0010	1980	2	0	0	2	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0011	1980	1	0	0	0	0	1	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0012	1980	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0013	1980	1	0	0	0	0	1	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0014	1980	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0015	1980	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0016	1980	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0017	1980	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0018	1980	1	0	0	0	0	1	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0019	1980	1	1	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0020	1980	1	1	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	a0021	1980	1	1	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3_chr6_52259015_52289742	1/0	a0001	808	398	90	59	207	11	30	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/1	a0002	808	23	0	10	0	1	11	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	a0003	808	3	0	0	3	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	a0004	808	1	0	1	0	0	0	copy fasta	MCM3	chr6	52259015	52289742