JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MCM3_chr6_52259015_52289742	0/0	a0005	808	1	0	0	1	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	a0006	808	1	0	0	0	0	1	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	a0007	808	1	1	0	0	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	a0008	808	1	0	0	1	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	a0009	808	1	1	0	0	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM4_chr8_47955941_47983160	0/1	a0001	863	284	87	44	112	6	34	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	1/0	a0002	863	22	3	7	0	6	5	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	a0003	863	3	0	0	3	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	a0004	863	1	1	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	a0005	863	1	1	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	a0006	863	1	0	0	0	0	1	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	a0007	863	1	0	1	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	a0008	863	1	0	0	1	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM5_chr22_35395140_35430431	0/0	a0000	0	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	1/1	a0001	734	384	74	76	171	17	44	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0002	734	9	3	3	2	0	1	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0003	734	1	1	0	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0004	734	1	0	1	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0005	734	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0006	734	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0007	734	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0008	734	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0009	734	1	0	0	0	0	1	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0010	734	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0011	734	1	0	0	0	1	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	a0012	734	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM6_chr2_135834626_135881443	1/1	a0001	821	385	83	72	182	8	38	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	a0002	821	1	0	1	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	a0003	821	1	1	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	a0004	821	1	0	1	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	a0005	821	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	a0006	821	1	1	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	a0007	821	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	a0008	821	1	1	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	a0009	821	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	a0010	821	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM7_chr7_100087728_100106397	1/1	a0001	719	321	85	52	130	15	37	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	a0002	719	87	4	18	53	3	9	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	a0003	719	3	0	0	0	0	3	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	a0004	719	2	0	2	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	a0005	719	2	2	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	a0006	719	2	0	2	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	a0007	719	1	0	0	1	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	a0008	719	1	0	0	0	0	1	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	a0009	719	1	1	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	a0010	719	1	1	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	a0011	719	1	1	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM8_chr20_5945652_6003977	1/1	a0001	840	173	28	39	78	10	16	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0002	840	92	39	10	27	3	13	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0003	840	48	1	0	45	0	2	copy fasta	MCM8	chr20	5945652	6003977