JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MCM8_chr20_5945652_6003977	0/0	a0004	840	22	12	8	0	1	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0005	840	8	0	6	0	1	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0006	840	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0007	840	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0008	840	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0009	840	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0010	840	2	0	0	0	0	2	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0011	840	2	0	0	2	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0012	840	2	0	0	0	0	2	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0013	840	1	0	0	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0014	840	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0015	840	1	0	0	0	1	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0016	840	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	a0017	840	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM9_chr6_118808455_118940159	0/1	a0001	1143	272	74	46	113	14	24	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0002	1143	28	3	8	8	3	6	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0003	1143	13	0	4	9	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0004	1143	9	0	7	0	1	1	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0005	1143	6	0	2	2	0	2	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0006	1143	3	2	1	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0007	1143	3	3	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0008	1143	2	2	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0009	1143	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0010	1143	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	1/0	a0011	1143	1	0	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0012	1143	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0013	1143	1	0	0	0	0	1	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0014	1143	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0015	1143	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0016	1143	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0017	1143	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0018	1143	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0019	1143	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	a0020	1143	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCMBP_chr10_119824440_119877843	1/1	a0001	640	389	88	76	166	16	41	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	a0002	640	7	7	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	a0003	640	2	0	0	2	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	a0004	640	1	0	0	0	0	1	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	a0005	640	1	1	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMDC2_chr8_66865771_66927048	1/1	a0001	681	148	44	30	46	7	19	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0002	681	12	2	5	1	0	4	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0003	681	10	10	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0004	681	9	7	2	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0005	681	7	6	1	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0006	681	7	0	4	0	3	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0007	681	2	2	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0008	681	2	2	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0009	681	1	1	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0010	681	1	0	0	0	0	1	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0011	681	1	0	0	1	0	0	copy fasta	MCMDC2	chr8	66865771	66927048