Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKUB1_chr3_149756100_149797554	0/0	a0013	544	1	0	1	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0014	544	1	0	0	1	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0015	544	1	1	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0016	544	1	1	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	a0017	544	1	1	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKZF1_chr2_219224806_219241679	1/1	a0001	726	260	59	59	98	13	29	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0002	726	37	7	7	12	2	9	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0003	726	35	14	0	19	0	2	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0004	726	18	0	12	6	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0005	726	6	0	0	6	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0006	726	3	3	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0007	726	3	0	2	0	1	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0008	726	3	3	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0009	726	2	0	0	2	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0010	726	1	1	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0011	726	1	0	0	1	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0012	726	1	0	0	0	0	1	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0013	726	1	0	0	1	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0014	726	1	0	0	1	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0015	726	1	1	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0016	726	1	0	0	0	0	1	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0017	319	1	0	0	0	0	1	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	a0018	726	1	0	0	0	0	1	copy fasta	ANKZF1	chr2	219224806	219241679
ANLN_chr7_36384862_36458791	1/1	a0001	1124	138	50	24	46	4	12	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0002	1125	135	16	20	82	3	14	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0003	1124	60	6	13	25	4	12	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0004	1125	49	7	7	25	5	5	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0005	1125	10	3	5	0	0	2	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0006	1125	4	3	1	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0007	1125	3	0	0	2	0	1	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0008	1125	1	1	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0009	1125	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0010	1124	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0011	1125	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0012	1125	1	1	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0013	1124	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0014	1124	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0015	1125	1	1	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	a0016	1125	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANO10_chr3_43360848_43627011	0/1	a0001	660	131	41	37	33	6	13	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	1/0	a0002	660	67	26	13	13	4	10	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	a0003	660	8	7	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	a0004	660	5	5	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	a0005	660	4	3	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	a0006	660	3	0	2	0	0	1	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	a0007	660	1	1	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	a0008	660	1	0	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	a0009	660	1	0	0	1	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	a0010	660	1	0	0	1	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	a0011	660	1	0	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011