JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MCMDC2_chr8_66865771_66927048	0/0	a0012	681	1	0	1	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	a0013	681	1	0	1	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCOLN1_chr19_7517624_7539009	1/1	a0001	580	401	87	81	170	18	43	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0002	580	2	0	0	2	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0003	580	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0004	580	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0005	580	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0006	580	1	0	1	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0007	580	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0008	580	1	0	0	1	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0009	580	1	0	0	0	0	1	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0010	580	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0011	580	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0012	580	1	0	0	1	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	a0013	580	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN2_chr1_84920583_85002113	1/1	a0001	566	316	56	63	150	12	33	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	a0002	566	10	8	2	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	a0003	566	9	9	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	a0004	566	4	4	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	a0005	566	3	3	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	a0006	566	3	1	2	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	a0007	566	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	a0008	566	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	a0009	566	1	0	0	0	0	1	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	a0010	566	1	0	1	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	a0011	566	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN3_chr1_85013082_85053500	1/1	a0001	553	366	78	65	173	16	32	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	a0002	553	1	1	0	0	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	a0003	553	1	0	0	1	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	a0004	553	1	0	1	0	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	a0005	553	1	1	0	0	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCPH1_chr8_6401627_6653508	0/1	a0001	835	55	9	13	21	5	6	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0002	835	46	4	2	34	2	4	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0003	835	33	3	8	13	0	9	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0004	835	13	0	0	13	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0005	835	12	0	0	9	0	3	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0006	835	11	9	2	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0007	835	7	0	0	2	0	5	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0008	835	6	6	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0009	835	6	5	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0010	835	5	5	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0011	835	5	1	3	0	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0012	835	5	0	2	2	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	1/0	a0013	835	4	3	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0014	835	4	0	0	4	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0015	835	3	3	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0016	835	3	2	1	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0017	835	3	3	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0018	835	3	0	0	3	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0019	835	3	3	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508