JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MCPH1_chr8_6401627_6653508	0/0	a0020	835	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0021	835	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0022	835	2	0	0	2	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0023	835	2	0	2	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0024	835	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0025	835	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0026	835	2	0	1	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0027	835	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0028	835	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0029	835	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0030	835	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0031	835	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0032	835	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0033	835	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0034	835	1	0	0	0	1	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0035	835	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0036	835	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0037	835	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0038	835	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0039	835	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0040	835	1	0	0	0	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0041	835	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0042	835	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0043	835	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	a0044	835	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCRIP1_chr17_81817361_81838291	1/1	a0001	97	365	89	80	136	16	42	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	a0002	97	1	1	0	0	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP2_chr16_636828_653474	1/1	a0001	160	419	98	78	179	16	46	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	a0002	160	1	0	0	1	0	0	copy fasta	MCRIP2	chr16	636828	653474
MCRS1_chr12_49553299_49573142	1/1	a0001	462	305	87	60	102	14	40	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	a0002	462	2	0	2	0	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	a0003	462	1	1	0	0	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCTP1_chr5_94698690_95290094	0/0	a0001	999	90	41	11	27	4	7	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	a0002	999	7	4	1	1	0	1	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	a0003	999	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP2_chr15_94226561_94488952	1/1	a0001	878	206	66	38	67	10	23	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0002	878	50	7	10	22	2	9	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0003	878	4	4	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0004	878	3	3	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0005	878	2	1	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0006	878	2	2	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0007	878	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0008	878	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0009	878	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0010	329	1	0	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0011	878	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0012	541	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0013	878	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0014	878	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	a0015	878	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952