JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MCTS1_chrX_120599101_120626159	1/1	a0001	181	315	76	48	154	9	26	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	a0002	121	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS2_chr20_31542379_31553081	1/1	a0001	181	349	90	76	131	14	36	copy fasta	MCTS2	chr20	31542379	31553081
MCTS2_chr20_31542379_31553081	0/0	a0002	31	1	0	0	1	0	0	copy fasta	MCTS2	chr20	31542379	31553081
MCUB_chr4_109555246_109693719	1/0	a0001	336	152	56	19	53	7	16	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	a0002	336	87	12	22	46	2	5	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/1	a0003	336	78	7	17	35	3	15	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	a0004	336	16	14	2	0	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	a0005	336	1	1	0	0	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	a0006	336	1	0	0	1	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	a0007	336	1	0	0	1	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUR1_chr6_13781557_13819557	0/1	a0001	359	239	74	48	88	8	20	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	1/0	a0002	359	133	21	19	71	8	13	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	a0003	359	51	1	5	40	2	3	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	a0004	359	1	0	0	1	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCU_chr10_72687143_72892694	1/1	a0001	351	207	82	45	48	8	22	copy fasta	MCU	chr10	72687143	72892694
MCU_chr10_72687143_72892694	0/0	a0002	351	2	1	1	0	0	0	copy fasta	MCU	chr10	72687143	72892694
MCU_chr10_72687143_72892694	0/0	a0003	351	1	1	0	0	0	0	copy fasta	MCU	chr10	72687143	72892694
MDC1_chr6_30694807_30722281	0/1	a0001	2089	262	59	47	115	11	29	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0002	2089	29	0	9	8	4	8	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0003	2089	24	2	6	12	1	3	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0004	2089	20	0	0	19	0	1	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0005	2089	16	3	1	12	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0006	2130	10	5	1	1	0	3	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0007	2089	7	4	2	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0008	2089	6	4	2	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0009	2089	5	0	4	0	1	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0010	2089	3	0	0	3	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0011	2089	3	2	1	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0012	2089	3	0	0	3	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0013	2130	2	0	2	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0014	2089	2	1	0	0	1	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0015	2089	2	0	0	2	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0016	2089	2	2	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0017	2089	2	2	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0018	2089	2	2	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0019	2089	2	0	0	2	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0020	2089	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0021	2089	1	0	1	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0022	2089	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0023	2089	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0024	2089	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0025	2089	1	1	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0026	2089	1	0	1	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0027	2089	1	0	1	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0028	2089	1	1	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0029	2089	1	1	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	a0030	2089	1	1	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDFIC2_chr3_70189479_70317638	0/1	a0001	189	185	50	48	58	6	22	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	1/0	a0002	189	182	40	19	97	4	21	copy fasta	MDFIC2	chr3	70189479	70317638