JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MDN1_chr6_89637498_89824794	0/0	a0031	5596	1	0	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0032	5596	1	0	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0033	5596	1	0	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0034	5596	1	0	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0035	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0036	5596	1	0	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0037	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0038	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0039	5596	1	0	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0040	5596	1	0	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0041	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0042	5596	1	0	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0043	5596	1	0	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0044	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0045	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0046	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0047	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0048	5596	1	0	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0049	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	a0050	5596	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDP1_chr14_24208943_24221066	1/0	a0001	176	307	50	58	146	13	39	copy fasta	MDP1	chr14	24208943	24221066
MDP1_chr14_24208943_24221066	0/1	a0002	164	94	38	8	39	3	5	copy fasta	MDP1	chr14	24208943	24221066
MDP1_chr14_24208943_24221066	0/0	a0003	176	2	0	2	0	0	0	copy fasta	MDP1	chr14	24208943	24221066
MDP1_chr14_24208943_24221066	0/0	a0004	164	1	0	0	1	0	0	copy fasta	MDP1	chr14	24208943	24221066
ME1_chr6_83205402_83436051	1/1	a0001	572	260	64	51	107	15	21	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	a0002	572	7	0	1	6	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	a0003	572	1	0	0	1	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	a0004	129	1	1	0	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	a0005	572	1	0	0	0	0	1	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	a0006	572	1	1	0	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	a0007	572	1	0	0	0	1	0	copy fasta	ME1	chr6	83205402	83436051
ME2_chr18_50874118_50959257	1/1	a0001	584	262	60	52	118	9	21	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	a0002	584	74	29	9	30	1	5	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	a0003	584	2	0	2	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	a0004	584	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	a0005	224	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	a0006	584	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	a0007	584	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME3_chr11_86436108_86677616	1/0	a0001	604	225	59	38	93	8	26	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/1	a0002	604	89	21	23	28	1	15	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	a0003	604	5	0	3	0	1	1	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	a0004	27	1	0	0	1	0	0	copy fasta	ME3	chr11	86436108	86677616
MEA1_chr6_43006143_43018946	1/1	a0001	185	327	94	71	126	6	28	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	a0002	185	2	0	0	2	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	a0003	185	2	0	2	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	a0004	185	1	0	1	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEAF6_chr1_37484993_37519766	1/1	a0001	191	428	92	78	198	16	42	copy fasta	MEAF6	chr1	37484993	37519766
MEAK7_chr16_84471355_84509659	0/1	a0001	456	316	30	52	187	9	37	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0002	456	93	30	19	28	6	10	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0003	456	18	15	3	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659