JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MEAK7_chr16_84471355_84509659	0/0	a0004	456	7	7	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0005	456	6	0	1	5	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0006	456	5	4	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0007	456	4	4	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0008	456	3	0	3	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0009	456	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0010	456	1	0	0	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0011	456	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	1/0	a0012	456	1	0	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0013	456	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0014	456	1	0	0	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0015	456	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0016	456	1	0	0	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0017	456	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0018	456	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0019	456	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0020	456	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0021	456	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0022	456	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	a0023	456	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MECOM_chr3_169078507_169668712	0/0	a0001	1239	127	61	12	38	2	14	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	a0002	1239	28	7	8	12	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	a0003	1239	2	0	0	2	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	a0004	1239	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	a0005	1239	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	a0006	1239	1	0	0	0	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECP2_chrX_154016573_154102717	1/1	a0001	486	225	70	38	94	5	16	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	a0002	486	2	0	0	2	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	a0003	486	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	a0004	486	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	a0005	391	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECR_chr1_29187657_29235934	0/0	a0001	373	247	63	54	89	8	33	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	1/1	a0002	373	133	26	23	73	0	9	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	a0003	373	2	1	1	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	a0004	373	1	1	0	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	a0005	373	1	1	0	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MED10_chr5_6366874_6383547	1/1	a0001	135	420	98	72	190	16	42	copy fasta	MED10	chr5	6366874	6383547
MED11_chr17_4726428_4738607	1/1	a0001	117	432	98	76	194	16	46	copy fasta	MED11	chr17	4726428	4738607
MED12L_chr3_151080664_151441653	1/1	a0001	2180	216	61	30	93	9	21	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	a0002	2180	43	2	15	15	3	8	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	a0003	2180	11	1	4	1	2	3	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	a0004	2180	5	3	2	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	a0005	1075	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	a0006	2180	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	a0007	2180	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	a0008	2180	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	a0009	2180	1	0	1	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12_chrX_71113596_71147450	0/0	a0000	0	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	1/1	a0001	2177	257	77	51	94	6	27	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	a0002	2181	3	3	0	0	0	0	copy fasta	MED12	chrX	71113596	71147450