JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MED15_chr22_20502610_20592619	0/0	a0012	788	1	1	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0013	778	1	0	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0014	792	1	0	1	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	a0015	788	1	0	1	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED16_chr19_862963_898187	1/1	a0001	877	36	8	7	13	0	6	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	a0002	877	13	9	1	3	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	a0003	877	1	0	1	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	a0004	836	1	0	1	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	a0005	877	1	0	1	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	a0006	877	1	0	0	0	0	1	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	a0007	877	1	0	1	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	a0008	877	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	a0009	877	1	0	0	0	0	1	copy fasta	MED16	chr19	862963	898187
MED17_chr11_93779282_93819963	0/1	a0001	651	160	23	22	93	5	16	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	1/0	a0002	651	152	55	22	49	7	18	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	a0003	651	5	5	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	a0004	651	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	a0005	651	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	a0006	651	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED18_chr1_28324040_28340965	1/1	a0001	208	362	88	82	128	18	44	copy fasta	MED18	chr1	28324040	28340965
MED18_chr1_28324040_28340965	0/0	a0002	208	2	2	0	0	0	0	copy fasta	MED18	chr1	28324040	28340965
MED19_chr11_57698710_57717215	1/1	a0001	244	380	90	78	148	16	46	copy fasta	MED19	chr11	57698710	57717215
MED1_chr17_39399285_39456263	1/1	a0001	1581	272	79	51	99	13	28	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	a0002	1581	3	3	0	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	a0003	1581	1	0	0	1	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	a0004	1581	1	0	1	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	a0005	1581	1	0	0	1	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	a0006	1581	1	0	0	0	1	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	a0007	1581	1	0	0	1	0	0	copy fasta	MED1	chr17	39399285	39456263
MED20_chr6_41900354_41926139	1/1	a0001	212	444	98	76	206	14	48	copy fasta	MED20	chr6	41900354	41926139
MED21_chr12_27017558_27035673	1/1	a0001	144	426	96	80	192	14	42	copy fasta	MED21	chr12	27017558	27035673
MED22_chr9_133333312_133353131	1/1	a0001	200	414	89	74	186	18	45	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	a0002	200	6	6	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	a0003	200	2	0	2	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	a0004	200	1	0	0	0	0	1	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	a0005	200	1	1	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED23_chr6_131581732_131633242	1/1	a0001	1368	317	88	50	135	12	30	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	a0002	1368	1	1	0	0	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	a0003	1368	1	0	0	1	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	a0004	1368	1	1	0	0	0	0	copy fasta	MED23	chr6	131581732	131633242
MED24_chr17_40014104_40059408	1/1	a0001	989	392	86	69	177	16	42	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	a0002	989	2	1	1	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	a0003	989	1	0	0	1	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	a0004	989	1	0	0	1	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	a0005	989	1	1	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	a0006	989	1	0	0	1	0	0	copy fasta	MED24	chr17	40014104	40059408
MED25_chr19_49813289_49841979	1/1	a0001	747	400	91	79	171	12	45	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	a0002	747	1	0	0	0	0	1	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	a0003	747	1	0	1	0	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	a0004	747	1	0	0	1	0	0	copy fasta	MED25	chr19	49813289	49841979