JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MEF2A_chr15_99560984_99721488	0/0	a0010	506	3	1	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0011	504	2	1	0	0	1	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0012	499	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0013	493	1	0	0	0	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0014	504	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0015	465	1	0	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0016	505	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0017	505	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0018	510	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2B_chr19_19140567_19175263	1/1	a0001	368	385	84	64	179	14	42	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	a0002	368	8	8	0	0	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	a0003	368	6	0	0	6	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	a0004	368	1	0	0	1	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	a0005	151	1	0	0	0	0	1	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	a0006	368	1	0	0	1	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	a0007	368	1	0	0	0	0	1	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	a0008	362	1	0	0	1	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2C_chr5_88712117_88888184	1/1	a0001	473	302	78	56	122	14	30	copy fasta	MEF2C	chr5	88712117	88888184
MEF2D_chr1_156458727_156505775	1/1	a0001	521	280	97	58	87	12	24	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	a0002	521	1	0	0	1	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	a0003	521	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEFV_chr16_3237027_3261633	1/1	a0001	781	303	83	58	121	11	28	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0002	781	41	2	0	30	0	9	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0003	781	30	2	18	5	2	3	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0004	781	13	0	0	13	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0005	781	6	0	0	5	1	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0006	781	5	0	0	5	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0007	781	4	4	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0008	781	3	3	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0009	781	2	2	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0010	781	2	0	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0011	781	2	0	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0012	781	2	0	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0013	781	2	0	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0014	781	2	2	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0015	781	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0016	781	1	0	0	0	1	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0017	781	1	0	0	0	1	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0018	781	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0019	781	1	0	1	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0020	781	1	0	1	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0021	781	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0022	781	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0023	781	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0024	781	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	a0025	781	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEGF10_chr5_127285796_127466222	1/1	a0001	1140	220	67	42	77	8	24	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	a0002	1140	27	3	6	14	2	2	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	a0003	1140	12	3	4	5	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	a0004	1140	2	2	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222