JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MEGF10_chr5_127285796_127466222	0/0	a0005	1140	2	2	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	a0006	1140	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	a0007	547	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	a0008	1140	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	a0009	1140	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	a0010	1140	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF11_chr15_65890299_66258750	0/1	a0001	1140	83	28	25	13	5	11	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0002	1140	68	29	10	17	3	9	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0003	1140	7	2	2	0	2	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0004	1140	4	0	1	2	0	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0005	1140	2	2	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0006	1140	2	0	0	0	0	2	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0007	1140	2	2	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0008	1140	2	2	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0009	1140	1	0	0	1	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0010	1140	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0011	1140	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	1/0	a0012	1140	1	0	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0013	1140	1	0	0	1	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	a0014	1140	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF6_chr1_3482951_3616508	0/1	a0001	1541	40	6	15	11	1	6	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0002	1541	25	1	8	3	3	10	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0003	1541	20	0	4	11	0	5	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0004	1541	12	1	8	3	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0005	1541	11	1	0	8	1	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0006	1541	9	2	1	4	2	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0007	1541	8	1	2	5	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0008	1541	8	4	1	2	0	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0009	1541	7	6	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0010	1541	5	0	3	2	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0011	1541	5	1	1	1	1	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0012	1541	5	0	0	3	1	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0013	1541	4	3	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0014	1541	4	4	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0015	1541	4	0	0	4	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0016	1541	4	0	0	4	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0017	1541	4	0	0	4	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0018	1541	4	1	0	3	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0019	1541	4	0	1	2	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0020	1541	3	0	0	3	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0021	1541	3	3	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0022	1541	3	2	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0023	1541	3	3	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0024	1541	3	2	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0025	1541	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0026	1541	2	0	1	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0027	1541	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0028	1541	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0029	1541	2	1	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0030	1541	2	0	0	2	0	0	copy fasta	MEGF6	chr1	3482951	3616508