JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MEGF6_chr1_3482951_3616508	0/0	a0081	1541	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0082	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0083	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0084	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0085	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0086	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0087	1541	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0088	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0089	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0090	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0091	1541	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0092	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0093	1541	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0094	1541	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0095	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0096	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0097	1541	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	a0098	1541	1	0	0	0	0	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF8_chr19_42320635_42383765	1/1	a0001	2845	122	46	34	20	6	14	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0002	2845	31	10	6	8	1	6	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0003	2845	2	2	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0004	2845	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0005	2845	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0006	2845	1	0	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0007	2845	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0008	2845	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0009	2845	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0010	2845	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0011	2845	1	0	0	0	1	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0012	2845	1	0	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0013	2845	1	0	0	0	0	1	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0014	2845	1	0	0	0	0	1	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0015	2845	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0016	2845	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0017	2845	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0018	2845	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0019	2845	1	0	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	a0020	2845	1	0	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF9_chr9_120595811_120719470	1/0	a0001	602	139	33	23	69	3	10	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/1	a0002	600	126	33	20	61	2	9	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	a0003	600	23	22	1	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	a0004	602	1	0	0	0	0	1	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	a0005	600	1	0	0	0	1	0	copy fasta	MEGF9	chr9	120595811	120719470
MEI1_chr22_41694503_41804454	1/1	a0001	1274	219	61	46	73	12	25	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	a0002	1274	13	1	4	7	0	1	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	a0003	1274	9	8	1	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	a0004	1274	5	4	1	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	a0005	1274	5	5	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	a0006	1274	3	2	1	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	a0007	1274	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454