JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MEIOSIN_chr19_45728439_45769541	0/0	a0009	638	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0010	638	1	1	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0011	640	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0012	640	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0013	640	1	1	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0014	640	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0015	644	1	0	0	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0016	640	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0017	642	1	1	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0018	640	1	0	0	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0019	640	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIS1_chr2_66430125_66578869	1/1	a0001	390	246	72	42	88	8	34	copy fasta	MEIS1	chr2	66430125	66578869
MEIS2_chr15_36884204_37105549	1/1	a0001	477	273	70	52	101	12	36	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	a0002	477	1	0	0	1	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS3_chr19_47398124_47424527	1/0	a0001	375	248	74	57	76	12	28	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	a0002	379	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	a0003	375	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	a0004	375	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MELK_chr9_36567895_36682682	1/1	a0001	651	220	66	40	76	2	34	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	a0002	651	9	9	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	a0003	651	5	5	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	a0004	651	3	3	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	a0005	651	2	0	0	2	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	a0006	651	2	0	0	2	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	a0007	651	1	1	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELTF_chr3_196996740_197034817	1/1	a0001	738	374	76	80	157	14	45	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0002	738	15	0	1	13	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0003	738	4	2	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0004	738	4	0	0	4	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0005	738	3	3	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0006	738	3	0	0	2	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0007	738	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0008	738	2	2	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0009	738	2	1	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0010	305	1	0	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0011	738	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0012	738	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0013	738	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0014	738	1	0	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0015	738	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0016	738	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0017	738	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0018	738	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0019	738	1	0	0	0	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	a0020	738	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MEMO1_chr2_31862823_32016008	1/1	a0001	297	303	80	61	124	12	24	copy fasta	MEMO1	chr2	31862823	32016008
MEMO1_chr2_31862823_32016008	0/0	a0002	297	1	0	1	0	0	0	copy fasta	MEMO1	chr2	31862823	32016008
MEN1_chr11_64798516_64815551	0/1	a0001	610	341	61	75	145	16	43	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	1/0	a0002	610	90	35	3	51	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	a0003	610	1	0	0	1	0	0	copy fasta	MEN1	chr11	64798516	64815551