JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MEN1_chr11_64798516_64815551	0/0	a0004	610	1	0	0	1	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	a0005	610	1	0	0	0	0	1	copy fasta	MEN1	chr11	64798516	64815551
MEOX1_chr17_43635389_43666922	1/1	a0001	254	336	55	69	156	10	44	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	a0002	254	41	35	4	0	0	2	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	a0003	254	1	1	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	a0004	254	1	0	1	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	a0005	254	1	1	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX2_chr7_15606212_15691683	0/0	a0001	303	177	72	36	44	7	18	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	1/1	a0002	304	103	12	27	35	8	19	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	a0003	303	58	3	2	52	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	a0004	304	7	0	3	4	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	a0005	303	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	a0006	303	1	0	0	0	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	a0007	303	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	a0008	303	1	0	0	1	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	a0009	304	1	0	0	0	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	a0010	303	1	0	0	0	1	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	a0011	303	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEP1A_chr6_46788389_46844778	0/0	a0001	746	117	27	19	58	2	11	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	1/0	a0002	746	94	5	20	55	3	10	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/1	a0003	746	62	10	12	20	6	13	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0004	746	23	19	2	2	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0005	746	16	4	5	6	0	1	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0006	746	11	6	1	3	0	1	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0007	746	10	9	1	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0008	746	4	4	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0009	746	4	0	0	0	2	2	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0010	746	3	0	0	0	0	3	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0011	746	2	2	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0012	746	1	1	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0013	746	1	0	0	0	1	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0014	746	1	0	0	1	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0015	746	1	1	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0016	746	1	0	0	1	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	a0017	746	1	0	0	0	0	1	copy fasta	MEP1A	chr6	46788389	46844778
MEP1B_chr18_32185039_32225404	0/0	a0001	701	182	49	34	77	7	15	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0002	701	110	19	16	59	5	11	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/1	a0003	701	33	13	8	0	4	7	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0004	701	8	8	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0005	701	3	1	1	0	0	1	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0006	701	3	0	0	0	2	1	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0007	701	2	0	0	2	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0008	701	2	2	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0009	124	1	1	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0010	701	1	0	1	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0011	701	1	0	0	1	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0012	701	1	0	0	0	0	1	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	1/0	a0013	701	1	0	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0014	701	1	1	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	a0015	701	1	0	0	1	0	0	copy fasta	MEP1B	chr18	32185039	32225404