JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MEPCE_chr7_100424831_100439118	1/1	a0001	689	339	93	56	130	16	42	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	a0002	689	2	0	0	0	0	2	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	a0003	689	1	1	0	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPE_chr4_87827969_87851792	1/1	a0001	525	339	82	59	152	12	32	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	a0002	525	94	7	20	51	4	12	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	a0003	525	4	4	0	0	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	a0004	525	3	0	0	3	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	a0005	525	2	2	0	0	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	a0006	525	2	2	0	0	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	a0007	525	2	0	1	0	0	1	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	a0008	525	1	1	0	0	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	a0009	525	1	0	0	1	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	a0010	525	1	0	0	0	0	1	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	a0011	525	1	0	0	1	0	0	copy fasta	MEPE	chr4	87827969	87851792
MERTK_chr2_111893607_112034561	1/0	a0001	999	117	26	29	43	2	16	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0002	999	73	24	22	17	2	8	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0003	999	45	0	10	21	6	8	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0004	999	15	14	1	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0005	999	14	9	1	1	2	1	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0006	999	5	5	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0007	999	5	1	2	0	2	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/1	a0008	999	3	0	2	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0009	999	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0010	999	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0011	999	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0012	999	1	0	0	1	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0013	999	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0014	999	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0015	999	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0016	999	1	0	0	1	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0017	999	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0018	999	1	0	1	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	a0019	999	1	0	0	0	0	1	copy fasta	MERTK	chr2	111893607	112034561
MESD_chr15_80970752_80994819	1/1	a0001	234	414	93	82	181	14	42	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	a0002	234	2	2	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	a0003	234	1	1	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	a0004	234	1	0	0	1	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	a0005	234	1	0	0	1	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	a0006	234	1	0	0	1	0	0	copy fasta	MESD	chr15	80970752	80994819
MESP1_chr15_89744875_89756249	1/1	a0001	268	205	10	44	126	8	15	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0002	272	72	20	11	25	4	12	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0003	268	71	10	23	16	6	16	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0004	268	37	32	0	2	0	3	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0005	272	7	0	0	7	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0006	272	5	3	2	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0007	268	4	3	1	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0008	272	4	4	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0009	268	3	2	1	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0010	268	3	3	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0011	272	3	0	0	3	0	0	copy fasta	MESP1	chr15	89744875	89756249