JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MESP1_chr15_89744875_89756249	0/0	a0012	272	3	2	1	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0013	268	2	0	1	1	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0014	268	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0015	268	1	0	0	1	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0016	268	1	0	0	1	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0017	272	1	0	0	0	0	1	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0018	268	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0019	268	1	0	0	0	0	1	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0020	268	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0021	268	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	a0022	268	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP2_chr15_89771332_89783754	0/1	a0001	389	186	13	35	113	8	16	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0002	393	146	35	33	40	10	28	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0003	397	24	19	3	0	0	2	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0004	393	8	8	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0005	393	6	6	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0006	393	5	4	1	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0007	389	4	0	0	4	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0008	389	3	0	0	3	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	1/0	a0009	397	2	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0010	389	2	2	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0011	389	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0012	389	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0013	357	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0014	389	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0015	389	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0016	393	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0017	393	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	a0018	393	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MEST_chr7_130487085_130511465	1/1	a0001	335	376	89	65	158	18	44	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	a0002	335	2	1	1	0	0	0	copy fasta	MEST	chr7	130487085	130511465
METAP1D_chr2_171994953_172087430	1/1	a0001	335	283	80	61	87	12	41	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	a0002	335	71	0	3	64	0	4	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	a0003	335	1	0	0	0	0	1	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	a0004	335	1	0	0	1	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1_chr4_98990721_99067809	1/1	a0001	386	336	92	65	134	12	31	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	a0002	386	1	0	1	0	0	0	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	a0003	386	1	0	0	0	0	1	copy fasta	METAP1	chr4	98990721	99067809
METAP2_chr12_95469152_95520839	1/1	a0001	478	380	86	74	160	16	42	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	a0002	478	1	0	0	1	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	a0003	478	1	0	0	1	0	0	copy fasta	METAP2	chr12	95469152	95520839
METRNL_chr17_83074609_83100122	0/1	a0001	311	375	74	64	177	15	44	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	a0002	311	7	2	2	0	2	1	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	a0003	311	6	5	1	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	a0004	311	4	0	3	0	1	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	a0005	311	3	3	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	a0006	311	1	0	0	0	0	1	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	a0007	311	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	a0008	311	1	1	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	a0009	311	1	1	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122