JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
METRN_chr16_710118_724655	1/1	a0001	293	388	87	78	165	11	45	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	a0002	293	4	4	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	a0003	293	2	2	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	a0004	293	2	2	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	a0005	293	2	0	0	1	1	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	a0006	293	1	0	0	0	0	1	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	a0007	293	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	a0008	293	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	a0009	293	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METTL13_chr1_171776660_171802716	1/1	a0001	699	196	58	39	65	8	24	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	a0002	699	135	25	21	72	3	14	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	a0003	699	38	1	9	23	3	2	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	a0004	699	2	2	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	a0005	699	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	a0006	699	1	0	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	a0007	699	1	0	1	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	a0008	699	1	0	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	a0009	699	1	0	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	a0010	699	1	0	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	a0011	699	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL14_chr4_118680392_118720430	1/1	a0001	456	390	93	68	177	16	34	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	a0002	456	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	a0003	456	1	0	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL15_chr11_28103388_28338507	0/1	a0001	407	225	55	21	125	3	20	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	1/0	a0002	407	85	10	17	40	1	16	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	a0003	407	6	6	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	a0004	407	6	6	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	a0005	407	3	3	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	a0006	407	2	0	0	2	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	a0007	407	1	0	0	1	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	a0008	407	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	a0009	407	1	0	0	1	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	a0010	407	1	0	0	1	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	a0011	407	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL16_chr17_2411049_2516888	1/1	a0001	562	286	82	65	90	16	31	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	a0002	562	9	1	3	0	0	5	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	a0003	562	2	2	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	a0004	562	1	1	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL17_chr14_20984980_21002035	1/1	a0001	456	433	95	82	199	16	39	copy fasta	METTL17	chr14	20984980	21002035
METTL17_chr14_20984980_21002035	0/0	a0002	456	41	4	2	29	0	6	copy fasta	METTL17	chr14	20984980	21002035
METTL17_chr14_20984980_21002035	0/0	a0003	456	1	0	0	0	0	1	copy fasta	METTL17	chr14	20984980	21002035
METTL17_chr14_20984980_21002035	0/0	a0004	456	1	1	0	0	0	0	copy fasta	METTL17	chr14	20984980	21002035
METTL17_chr14_20984980_21002035	0/0	a0005	445	1	0	0	1	0	0	copy fasta	METTL17	chr14	20984980	21002035
METTL17_chr14_20984980_21002035	0/0	a0006	478	1	0	0	1	0	0	copy fasta	METTL17	chr14	20984980	21002035
METTL18_chr1_169787529_169799907	1/0	a0001	372	339	64	58	177	9	30	copy fasta	METTL18	chr1	169787529	169799907
METTL18_chr1_169787529_169799907	0/1	a0002	372	100	24	16	36	7	16	copy fasta	METTL18	chr1	169787529	169799907
METTL18_chr1_169787529_169799907	0/0	a0003	372	5	5	0	0	0	0	copy fasta	METTL18	chr1	169787529	169799907
METTL18_chr1_169787529_169799907	0/0	a0004	372	3	2	1	0	0	0	copy fasta	METTL18	chr1	169787529	169799907
METTL18_chr1_169787529_169799907	0/0	a0005	372	3	0	0	3	0	0	copy fasta	METTL18	chr1	169787529	169799907
METTL18_chr1_169787529_169799907	0/0	a0006	372	1	1	0	0	0	0	copy fasta	METTL18	chr1	169787529	169799907