Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANO6_chr12_45211095_45437349	1/1	a0001	910	217	56	34	112	2	11	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	a0002	910	3	3	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	a0003	910	3	3	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	a0004	910	3	3	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	a0005	910	2	2	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	a0006	910	1	1	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	a0007	910	1	0	0	1	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	a0008	910	1	1	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	a0009	910	1	0	0	0	0	1	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	a0010	408	1	0	0	1	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	a0011	910	1	1	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO7_chr2_241183677_241230976	1/0	a0001	879	149	19	22	69	7	31	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0002	879	39	3	0	34	0	2	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/1	a0003	879	36	7	7	14	1	6	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0004	879	27	0	14	13	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0005	879	24	9	13	0	1	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0006	859	18	17	1	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0007	879	17	8	6	0	3	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0008	879	14	4	8	0	2	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0009	859	13	13	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0010	879	11	0	0	11	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0011	879	9	0	1	8	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0012	879	9	0	1	8	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0013	879	6	6	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0014	879	2	2	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0015	879	2	0	0	0	1	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0016	879	2	0	1	0	1	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0017	799	1	0	0	1	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0018	879	1	0	0	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0019	879	1	0	0	1	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0020	879	1	0	1	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0021	879	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0022	879	1	0	1	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0023	879	1	0	0	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0024	879	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0025	879	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0026	879	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0027	584	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0028	879	1	0	0	0	0	1	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0029	859	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0030	879	1	0	0	1	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0031	879	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0032	879	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0033	879	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	a0034	879	1	1	0	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO8_chr19_17318223_17339855	1/1	a0001	1232	344	85	76	130	12	39	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	a0002	1232	10	4	2	0	4	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	a0003	1232	3	3	0	0	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	a0004	1232	2	0	0	0	2	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	a0005	1232	1	0	0	0	0	1	copy fasta	ANO8	chr19	17318223	17339855