JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
METTL18_chr1_169787529_169799907	0/0	a0007	372	1	1	0	0	0	0	copy fasta	METTL18	chr1	169787529	169799907
METTL18_chr1_169787529_169799907	0/0	a0008	115	1	0	1	0	0	0	copy fasta	METTL18	chr1	169787529	169799907
METTL18_chr1_169787529_169799907	0/0	a0009	372	1	1	0	0	0	0	copy fasta	METTL18	chr1	169787529	169799907
METTL1_chr12_57763471_57777105	1/1	a0001	276	359	89	66	150	14	38	copy fasta	METTL1	chr12	57763471	57777105
METTL1_chr12_57763471_57777105	0/0	a0002	276	1	1	0	0	0	0	copy fasta	METTL1	chr12	57763471	57777105
METTL21A_chr2_207607739_207630394	0/0	a0001	218	349	77	57	168	13	34	copy fasta	METTL21A	chr2	207607739	207630394
METTL21A_chr2_207607739_207630394	1/1	a0002	218	31	11	11	0	1	6	copy fasta	METTL21A	chr2	207607739	207630394
METTL21A_chr2_207607739_207630394	0/0	a0003	218	2	2	0	0	0	0	copy fasta	METTL21A	chr2	207607739	207630394
METTL21A_chr2_207607739_207630394	0/0	a0004	218	1	0	0	1	0	0	copy fasta	METTL21A	chr2	207607739	207630394
METTL21A_chr2_207607739_207630394	0/0	a0005	218	1	1	0	0	0	0	copy fasta	METTL21A	chr2	207607739	207630394
METTL21A_chr2_207607739_207630394	0/0	a0006	218	1	1	0	0	0	0	copy fasta	METTL21A	chr2	207607739	207630394
METTL21A_chr2_207607739_207630394	0/0	a0007	52	1	0	0	1	0	0	copy fasta	METTL21A	chr2	207607739	207630394
METTL21C_chr13_102680747_102700044	0/1	a0001	264	365	68	50	201	10	35	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	1/0	a0002	264	105	20	35	35	5	9	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	a0003	264	6	3	2	0	1	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	a0004	264	3	0	0	3	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	a0005	264	2	0	0	0	0	2	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	a0006	264	2	0	1	0	0	1	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	a0007	264	2	2	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	a0008	169	1	0	0	1	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	a0009	264	1	0	0	0	0	1	copy fasta	METTL21C	chr13	102680747	102700044
METTL21C_chr13_102680747_102700044	0/0	a0010	264	1	1	0	0	0	0	copy fasta	METTL21C	chr13	102680747	102700044
METTL22_chr16_8616698_8654654	0/1	a0001	404	208	75	49	53	7	23	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	a0002	404	81	1	11	55	6	8	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	a0003	404	78	2	16	45	3	12	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	1/0	a0004	404	12	11	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	a0005	404	2	0	0	0	0	2	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	a0006	404	2	2	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	a0007	404	2	0	0	0	0	2	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	a0008	404	1	0	0	0	0	1	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	a0009	204	1	0	0	0	0	1	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	a0010	404	1	0	0	1	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	a0011	404	1	0	0	0	0	1	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	a0012	404	1	1	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL23_chr17_76721839_76738880	1/1	a0001	190	404	91	65	188	16	42	copy fasta	METTL23	chr17	76721839	76738880
METTL23_chr17_76721839_76738880	0/0	a0002	190	4	3	1	0	0	0	copy fasta	METTL23	chr17	76721839	76738880
METTL23_chr17_76721839_76738880	0/0	a0003	190	3	1	2	0	0	0	copy fasta	METTL23	chr17	76721839	76738880
METTL23_chr17_76721839_76738880	0/0	a0004	190	1	1	0	0	0	0	copy fasta	METTL23	chr17	76721839	76738880
METTL24_chr6_110238940_110363349	1/1	a0001	366	241	58	45	114	2	20	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0002	366	16	15	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0003	366	2	2	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0004	366	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0005	366	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0006	366	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0007	366	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0008	366	1	0	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0009	366	1	0	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0010	366	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0011	366	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	a0012	366	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349