JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
METTL25B_chr1_156723469_156741960	0/1	a0001	475	379	89	82	141	16	50	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	1/0	a0002	475	8	7	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	a0003	475	2	0	2	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	a0004	475	1	0	0	1	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25_chr12_82353529_82484239	0/0	a0001	603	86	39	17	12	6	12	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	1/0	a0002	603	18	13	2	0	2	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	a0003	603	12	2	3	1	2	4	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	a0004	603	7	7	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	a0005	603	3	3	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	a0006	603	1	0	0	1	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	a0007	603	1	1	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/1	a0008	603	1	0	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	a0009	603	1	1	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL26_chr16_629430_641305	1/1	a0001	204	402	95	82	162	14	47	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	a0002	204	1	1	0	0	0	0	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	a0003	204	1	0	0	0	0	1	copy fasta	METTL26	chr16	629430	641305
METTL27_chr7_73829590_73847516	1/0	a0001	245	179	53	29	69	7	20	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/1	a0002	245	165	27	47	69	4	17	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	a0003	245	15	15	0	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	a0004	245	3	0	0	3	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	a0005	245	3	0	1	0	1	1	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	a0006	245	1	0	1	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	a0007	245	1	0	1	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	a0008	245	1	0	0	1	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	a0009	243	1	0	0	1	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	a0010	245	1	0	0	1	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	a0011	245	1	0	1	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	a0012	50	1	1	0	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL2A_chr17_62418897_62458385	0/1	a0001	378	340	72	70	162	8	27	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	a0002	378	20	18	2	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	a0003	378	1	0	1	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	a0004	378	1	0	0	0	0	1	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	a0005	378	1	0	1	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2B_chr7_128471748_128511602	0/0	a0001	378	307	73	58	129	12	35	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	a0002	378	61	0	6	50	0	5	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	1/0	a0003	378	15	14	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	a0004	378	9	1	6	1	1	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	a0005	378	5	0	0	5	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/1	a0006	378	3	0	1	0	1	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	a0007	378	3	0	0	3	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	a0008	378	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	a0009	378	1	0	1	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	a0010	378	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL3_chr14_21493138_21516340	1/1	a0001	580	416	94	72	188	16	44	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	a0002	580	3	3	0	0	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	a0003	580	2	2	0	0	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	a0004	580	2	0	0	2	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	a0005	580	1	0	0	1	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	a0006	580	1	0	0	1	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	a0007	580	1	1	0	0	0	0	copy fasta	METTL3	chr14	21493138	21516340