JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
METTL4_chr18_2532530_2576505	0/1	a0001	472	169	49	26	57	12	24	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	a0002	472	164	7	31	106	6	14	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	a0003	472	51	24	6	21	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	1/0	a0004	472	17	13	3	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	a0005	472	1	1	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	a0006	472	1	0	1	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	a0007	472	1	0	1	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL5_chr2_169806757_169829905	1/1	a0001	209	403	97	65	181	16	42	copy fasta	METTL5	chr2	169806757	169829905
METTL5_chr2_169806757_169829905	0/0	a0002	209	7	0	0	7	0	0	copy fasta	METTL5	chr2	169806757	169829905
METTL5_chr2_169806757_169829905	0/0	a0003	209	2	1	1	0	0	0	copy fasta	METTL5	chr2	169806757	169829905
METTL6_chr3_15404760_15432544	1/1	a0001	284	404	94	70	180	12	46	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	a0002	284	2	2	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL8_chr2_171310746_171438990	1/1	a0001	407	310	72	59	139	8	30	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	a0002	407	7	6	1	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	a0003	407	4	0	0	4	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	a0004	407	3	3	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	a0005	327	3	3	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	a0006	407	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	a0007	407	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	a0008	378	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	a0009	407	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	a0010	407	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL9_chr16_21594577_21662471	1/1	a0001	318	364	70	66	178	10	38	copy fasta	METTL9	chr16	21594577	21662471
MET_chr7_116667196_116803377	1/1	a0001	1390	316	82	58	129	9	36	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0002	1390	9	0	2	7	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0003	1390	4	4	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0004	1390	2	0	0	2	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0005	1390	2	2	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0006	1390	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0007	1390	1	0	0	0	1	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0008	1390	1	0	0	1	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0009	1390	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0010	1390	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0011	1390	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	a0012	1390	1	0	0	1	0	0	copy fasta	MET	chr7	116667196	116803377
MEX3A_chr1_156067013_156087465	1/1	a0001	520	339	89	58	136	12	42	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	a0002	520	1	1	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3B_chr15_82036778_82051018	1/1	a0001	569	446	94	83	205	16	46	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	a0002	569	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	a0003	569	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	a0004	569	1	0	1	0	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	a0005	569	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3C_chr18_51169550_51202681	1/0	a0001	659	253	58	47	119	9	19	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/1	a0002	656	95	14	13	48	7	12	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	a0003	661	13	0	0	12	0	1	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	a0004	659	9	9	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	a0005	659	1	0	1	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	a0006	659	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	a0007	659	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	a0008	656	1	0	0	1	0	0	copy fasta	MEX3C	chr18	51169550	51202681