JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MEX3C_chr18_51169550_51202681	0/0	a0009	656	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	a0010	659	1	0	1	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3D_chr19_1549672_1573325	1/1	a0001	651	349	73	70	148	18	38	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0002	651	6	1	5	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0003	651	3	0	3	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0004	651	3	0	0	3	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0005	651	2	2	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0006	651	2	0	0	2	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0007	651	1	0	1	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0008	651	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0009	651	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0010	651	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0011	651	1	1	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0012	651	1	1	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	a0013	651	1	0	1	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MFAP1_chr15_43799492_43829690	1/1	a0001	439	333	86	47	158	10	30	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	a0002	439	4	0	0	4	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	a0003	439	2	2	0	0	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	a0004	439	1	0	1	0	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP2_chr1_16969502_16985620	1/1	a0001	183	406	96	75	185	16	32	copy fasta	MFAP2	chr1	16969502	16985620
MFAP2_chr1_16969502_16985620	0/0	a0002	183	1	0	0	1	0	0	copy fasta	MFAP2	chr1	16969502	16985620
MFAP2_chr1_16969502_16985620	0/0	a0003	183	1	0	1	0	0	0	copy fasta	MFAP2	chr1	16969502	16985620
MFAP3L_chr4_169981602_170031395	1/1	a0001	409	327	89	52	122	16	46	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	a0002	409	1	1	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3_chr5_154033967_154062450	1/1	a0001	362	411	98	71	181	14	45	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	a0002	362	1	0	0	0	0	1	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	a0003	362	1	0	0	1	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	a0004	362	1	0	1	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP4_chr17_19378445_19392190	1/1	a0001	255	364	84	72	148	14	44	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	a0002	255	3	3	0	0	0	0	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	a0003	255	1	1	0	0	0	0	copy fasta	MFAP4	chr17	19378445	19392190
MFAP5_chr12_8640943_8667826	1/1	a0001	173	371	92	70	149	12	46	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	a0002	173	1	0	0	1	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFF_chr2_227320251_227362833	1/1	a0001	291	405	96	56	199	14	38	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	a0002	291	1	0	0	1	0	0	copy fasta	MFF	chr2	227320251	227362833
MFGE8_chr15_88893683_88918379	0/0	a0001	387	181	51	35	78	9	8	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	1/1	a0002	387	140	16	20	84	3	15	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0003	387	82	24	14	24	6	14	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0004	387	20	5	3	8	0	4	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0005	387	3	0	0	0	0	3	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0006	387	2	0	2	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0007	387	2	0	0	0	0	2	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0008	387	1	0	0	1	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0009	387	1	0	0	1	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0010	387	1	0	0	0	0	1	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0011	387	1	0	1	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0012	40	1	0	1	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	a0013	387	1	0	0	0	0	1	copy fasta	MFGE8	chr15	88893683	88918379
MFHAS1_chr8_8778354_8898630	0/1	a0001	1052	300	82	59	107	11	40	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	1/0	a0002	1052	9	2	5	0	1	0	copy fasta	MFHAS1	chr8	8778354	8898630