JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MFHAS1_chr8_8778354_8898630	0/0	a0003	1052	4	0	0	4	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	a0004	1052	2	2	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	a0005	1052	1	0	1	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	a0006	1052	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	a0007	1052	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	a0008	1052	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	a0009	1052	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	a0010	1052	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	a0011	1052	1	0	1	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	a0012	1052	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	a0013	1048	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFN1_chr3_179342709_179399936	1/1	a0001	741	397	92	77	170	12	44	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	a0002	741	2	0	0	2	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	a0003	741	1	0	1	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	a0004	741	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	a0005	741	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN2_chr1_11975444_12018508	1/1	a0001	757	389	91	64	172	14	46	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	a0002	757	2	2	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	a0003	757	1	1	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	a0004	757	1	0	0	1	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	a0005	757	1	0	0	1	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFNG_chr22_37464063_37491384	1/1	a0001	321	288	80	50	109	8	39	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	a0002	321	1	1	0	0	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	a0003	321	1	0	0	0	0	1	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	a0004	321	1	0	0	1	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	a0005	321	1	1	0	0	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFRP_chr11_119333942_119351705	1/1	a0001	579	236	63	51	89	5	26	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0002	579	56	4	15	20	5	12	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0003	579	9	9	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0004	579	5	0	5	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0005	579	3	3	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0006	579	2	2	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0007	579	2	0	0	2	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0008	579	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0009	579	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0010	579	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0011	579	1	0	1	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	a0012	579	1	1	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFSD10_chr4_2925567_2939825	1/1	a0001	455	414	93	81	176	17	45	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	a0002	455	3	0	0	2	1	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	a0003	455	1	0	0	1	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	a0004	455	1	1	0	0	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	a0005	455	1	0	0	1	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	a0006	455	1	0	1	0	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	a0007	455	1	0	0	0	0	1	copy fasta	MFSD10	chr4	2925567	2939825
MFSD11_chr17_76733119_76784341	1/1	a0001	449	345	85	58	155	14	31	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	a0002	449	1	0	0	1	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	a0003	449	1	0	0	0	0	1	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	a0004	449	1	1	0	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD12_chr19_3539199_3562586	1/1	a0001	480	304	60	72	118	16	36	copy fasta	MFSD12	chr19	3539199	3562586