JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MFSD12_chr19_3539199_3562586	0/0	a0002	480	70	0	11	58	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0003	480	15	14	1	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0004	480	14	6	1	0	0	7	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0005	480	5	5	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0006	480	5	5	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0007	480	4	3	1	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0008	480	2	1	0	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0009	480	1	0	0	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0010	480	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0011	480	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0012	480	1	0	0	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0013	480	1	0	0	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0014	480	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	a0015	480	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD13A_chr10_102456395_102482045	1/1	a0001	517	417	90	73	190	14	48	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	a0002	517	3	0	0	3	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	a0003	517	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	a0004	517	1	0	1	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	a0005	517	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	a0006	517	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD14A_chr1_100033095_100088377	1/1	a0001	490	242	74	50	82	10	24	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14B_chr9_94369569_94466042	1/1	a0001	506	349	78	69	144	16	40	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	a0002	506	1	0	1	0	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD1_chr3_158797054_158834716	1/0	a0001	465	174	26	32	88	6	21	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/1	a0002	465	157	57	32	42	7	18	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	a0003	465	61	5	11	42	1	2	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	a0004	465	5	4	1	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	a0005	465	2	0	0	1	0	1	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	a0006	465	1	0	0	1	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	a0007	465	1	1	0	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	a0008	465	1	1	0	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD2A_chr1_39950145_39974956	1/1	a0001	530	386	90	64	166	16	48	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2A_chr1_39950145_39974956	0/0	a0002	530	4	4	0	0	0	0	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2A_chr1_39950145_39974956	0/0	a0003	530	1	0	0	1	0	0	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2A_chr1_39950145_39974956	0/0	a0004	530	1	0	0	1	0	0	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2B_chr2_24005085_24031775	1/1	a0001	504	282	71	63	92	15	39	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0002	504	9	8	1	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0003	504	7	0	2	0	3	2	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0004	504	5	5	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0005	504	3	3	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0006	504	2	0	2	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0007	504	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0008	504	1	0	1	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0009	504	1	0	0	1	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0010	504	1	0	0	0	0	1	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0011	504	1	0	1	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0012	504	1	0	0	1	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0013	504	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	a0014	504	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD3_chr8_144504070_144516213	1/1	a0001	412	371	79	72	160	16	42	copy fasta	MFSD3	chr8	144504070	144516213