JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MFSD3_chr8_144504070_144516213	0/0	a0002	412	9	9	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	a0003	412	5	4	1	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	a0004	295	3	0	0	3	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	a0005	412	3	0	0	3	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	a0006	412	2	2	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	a0007	412	2	1	1	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	a0008	412	2	2	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	a0009	412	1	1	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	a0010	331	1	0	0	1	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	a0011	401	1	0	0	1	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD4A_chr1_205564014_205607918	1/0	a0001	514	215	27	30	126	8	23	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/1	a0002	514	140	66	38	10	8	17	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	a0003	514	16	0	8	3	0	5	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	a0004	514	3	0	3	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	a0005	514	2	1	1	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	a0006	514	1	0	0	0	0	1	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	a0007	514	1	0	0	1	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4B_chr6_111254339_111285005	1/1	a0001	518	352	86	69	149	11	35	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	a0002	518	4	4	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	a0003	518	2	2	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	a0004	518	2	0	0	0	1	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	a0005	518	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	a0006	518	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	a0007	518	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	a0008	518	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD5_chr12_53247095_53259406	1/1	a0001	450	409	92	70	183	18	44	copy fasta	MFSD5	chr12	53247095	53259406
MFSD5_chr12_53247095_53259406	0/0	a0002	450	1	0	0	1	0	0	copy fasta	MFSD5	chr12	53247095	53259406
MFSD6L_chr17_8792110_8804365	1/0	a0001	586	207	46	48	84	9	19	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/1	a0002	586	144	20	16	85	7	15	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0003	586	40	3	11	23	2	1	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0004	586	22	6	5	6	0	5	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0005	586	16	0	0	13	0	3	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0006	586	15	6	2	4	0	3	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0007	586	13	0	0	12	0	1	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0008	586	10	8	2	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0009	586	3	3	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0010	586	3	0	0	3	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0011	586	3	0	0	3	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0012	586	3	0	0	3	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0013	586	2	0	0	2	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0014	586	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0015	586	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0016	586	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0017	586	1	0	0	0	0	1	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0018	586	1	0	1	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0019	586	1	0	1	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0020	586	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0021	586	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	a0022	586	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6_chr2_190403355_190507314	1/0	a0001	791	177	44	26	79	9	18	copy fasta	MFSD6	chr2	190403355	190507314