JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MFSD6_chr2_190403355_190507314	0/1	a0002	791	157	21	29	93	3	10	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	a0003	791	3	3	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	a0004	791	2	0	0	2	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	a0005	791	2	2	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	a0006	791	1	0	1	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	a0007	791	1	1	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	a0008	791	1	1	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD8_chr4_127912805_127970173	1/1	a0001	518	243	69	35	95	12	30	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	a0002	518	88	19	7	62	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	a0003	518	16	0	3	13	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	a0004	518	3	2	1	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	a0005	518	1	0	0	1	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	a0006	518	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	a0007	518	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	a0008	518	1	0	0	1	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD9_chr2_102709630_102741888	1/1	a0001	474	348	68	64	166	14	34	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0002	474	15	0	5	7	1	2	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0003	474	5	5	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0004	474	5	5	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0005	474	3	2	1	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0006	101	2	0	0	0	1	1	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0007	474	2	2	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0008	474	1	1	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0009	474	1	0	1	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0010	474	1	1	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0011	474	1	0	0	1	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0012	474	1	0	0	0	0	1	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	a0013	474	1	0	1	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MGAM2_chr7_142106718_142227324	0/1	a0001	2515	86	6	18	50	5	6	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0002	2515	76	23	11	28	3	11	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0003	2515	15	0	5	6	1	3	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0004	2515	13	0	0	12	0	1	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0005	2515	11	0	0	11	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0006	252	8	1	0	5	0	2	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0007	2515	8	0	4	2	1	1	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0008	2515	7	0	0	7	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0009	2515	7	6	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0010	2515	7	2	3	1	1	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0011	2515	6	0	1	3	2	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0012	2515	6	0	5	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0013	2515	4	3	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0014	2515	4	4	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0015	2515	4	4	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0016	2515	4	3	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0017	2515	3	3	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0018	2515	3	3	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0019	2515	3	0	0	3	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0020	2515	3	0	1	2	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0021	2515	2	0	0	2	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0022	2515	2	1	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324