JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MGAM2_chr7_142106718_142227324	0/0	a0023	2515	2	0	0	2	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0024	2515	2	0	0	0	0	2	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0025	2515	2	2	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0026	2515	2	2	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0027	2515	2	2	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0028	2515	2	0	0	0	0	2	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0029	2515	1	0	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0030	2515	1	0	0	0	0	1	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0031	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0032	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0033	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0034	2515	1	0	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0035	1457	1	0	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0036	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0037	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0038	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0039	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0040	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0041	2515	1	0	0	0	0	1	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0042	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0043	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0044	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0045	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0046	2515	1	0	0	0	0	1	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0047	2515	1	0	0	0	1	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0048	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0049	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0050	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0051	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0052	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0053	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0054	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0055	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0056	2515	1	0	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0057	2515	1	0	0	0	0	1	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0058	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0059	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0060	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0061	2515	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0062	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	a0063	2515	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM_chr7_141990879_142111747	0/0	a0001	2753	108	10	25	54	8	11	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0002	2753	52	1	7	28	4	12	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0003	1857	32	1	12	13	2	4	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0004	2753	14	2	0	12	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0005	2753	10	0	0	5	0	5	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0006	2753	7	0	3	4	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0007	2753	5	5	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0008	2753	4	0	0	4	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0009	2753	4	4	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747