Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANO8_chr19_17318223_17339855	0/0	a0006	1232	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	a0007	1232	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	a0008	1232	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO8_chr19_17318223_17339855	0/0	a0009	1232	1	0	0	1	0	0	copy fasta	ANO8	chr19	17318223	17339855
ANO9_chr11_412938_447011	0/0	a0001	782	174	52	34	59	8	21	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0002	782	55	24	5	20	1	5	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	1/1	a0003	782	18	0	14	0	2	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0004	782	7	0	4	0	3	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0005	782	5	0	0	5	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0006	313	5	0	3	2	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0007	782	5	0	3	0	2	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0008	782	5	4	1	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0009	782	4	0	3	0	1	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0010	313	3	1	1	1	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0011	782	2	0	2	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0012	782	1	1	0	0	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0013	782	1	0	0	1	0	0	copy fasta	ANO9	chr11	412938	447011
ANO9_chr11_412938_447011	0/0	a0014	313	1	0	0	0	1	0	copy fasta	ANO9	chr11	412938	447011
ANOS1_chrX_8523874_8737137	0/0	a0001	680	122	29	20	58	5	10	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	1/1	a0002	680	102	37	22	27	4	10	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	a0003	680	2	0	2	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	a0004	680	1	0	0	1	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	a0005	680	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	a0006	680	1	0	1	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	a0007	680	1	0	0	1	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANOS1_chrX_8523874_8737137	0/0	a0008	680	1	1	0	0	0	0	copy fasta	ANOS1	chrX	8523874	8737137
ANP32A_chr15_68773535_68825895	1/1	a0001	249	354	94	50	172	8	28	copy fasta	ANP32A	chr15	68773535	68825895
ANP32B_chr9_97978341_98020943	1/1	a0001	251	307	85	57	113	14	36	copy fasta	ANP32B	chr9	97978341	98020943
ANP32B_chr9_97978341_98020943	0/0	a0002	251	1	1	0	0	0	0	copy fasta	ANP32B	chr9	97978341	98020943
ANP32B_chr9_97978341_98020943	0/0	a0003	251	1	0	0	1	0	0	copy fasta	ANP32B	chr9	97978341	98020943
ANP32B_chr9_97978341_98020943	0/0	a0004	251	1	0	1	0	0	0	copy fasta	ANP32B	chr9	97978341	98020943
ANP32D_chr12_48467559_48478622	1/1	a0001	131	277	76	59	90	16	34	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	a0002	131	154	15	23	106	2	8	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	a0003	131	2	0	2	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32D_chr12_48467559_48478622	0/0	a0004	131	1	1	0	0	0	0	copy fasta	ANP32D	chr12	48467559	48478622
ANP32E_chr1_150213417_150241112	1/1	a0001	268	217	83	32	76	8	16	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	a0002	266	150	11	26	91	6	16	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	a0003	266	1	1	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	a0004	268	1	1	0	0	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANP32E_chr1_150213417_150241112	0/0	a0005	268	1	0	0	1	0	0	copy fasta	ANP32E	chr1	150213417	150241112
ANPEP_chr15_89779895_89819852	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/1	a0001	967	88	35	14	35	2	1	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	1/0	a0002	967	87	1	16	43	9	17	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0003	967	56	26	7	18	3	2	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0004	967	52	3	15	28	2	4	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0005	967	33	10	1	10	0	12	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0006	967	33	5	4	18	1	5	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0007	967	11	4	6	0	0	1	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0008	96	7	1	2	4	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0009	967	4	3	0	0	1	0	copy fasta	ANPEP	chr15	89779895	89819852