JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MGAT4D_chr4_140437262_140503293	1/0	a0001	374	218	65	37	92	4	19	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/1	a0002	374	104	17	23	48	2	13	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	a0003	374	5	0	0	5	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	a0004	374	3	0	2	0	1	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	a0005	374	1	0	0	0	1	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	a0006	318	1	0	0	1	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT5B_chr17_76863404_76955393	1/1	a0001	792	146	25	39	51	9	20	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	a0002	792	120	43	24	36	3	14	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	a0003	792	5	0	0	5	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	a0004	792	1	0	0	0	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	a0005	792	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	a0006	792	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	a0007	792	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	a0008	792	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	a0009	792	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	a0010	792	1	0	0	0	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5_chr2_134249072_134459621	1/1	a0001	741	281	86	44	112	6	31	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	a0002	741	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGA_chr15_41655405_41774940	0/0	a0001	3114	109	28	21	43	4	13	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/1	a0002	3114	62	2	19	30	3	7	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	1/0	a0003	3114	54	17	10	20	2	4	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0004	3114	17	15	2	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0005	3114	10	5	2	0	0	3	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0006	3114	7	7	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0007	3114	3	3	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0008	3114	2	0	2	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0009	3114	2	0	0	2	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0010	3114	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0011	3114	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0012	3114	1	0	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0013	3114	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0014	3114	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0015	3114	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0016	3114	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0017	3114	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0018	3114	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0019	3114	1	0	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0020	3114	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0021	3114	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0022	3114	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0023	3114	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0024	3114	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0025	3114	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0026	3114	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0027	3114	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0028	3114	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0029	3114	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0030	3114	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0031	3114	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0032	3114	1	0	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940