JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MGA_chr15_41655405_41774940	0/0	a0033	3114	1	0	0	0	1	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0034	3114	1	0	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	a0035	3114	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGLL_chr3_127684066_127827515	1/1	a0001	313	310	90	41	131	10	36	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	a0002	313	2	0	0	2	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	a0003	313	1	0	0	1	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	a0004	313	1	0	1	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGME1_chr20_17964018_17996122	1/1	a0001	344	372	88	57	170	15	40	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	a0002	344	26	3	13	5	3	2	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	a0003	344	1	0	0	1	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	a0004	344	1	0	1	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	a0005	344	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	a0006	344	1	0	1	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGMT_chr10_129462241_129775983	1/1	a0001	207	154	57	31	41	4	19	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	a0002	207	33	17	9	7	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	a0003	207	4	0	1	0	2	1	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	a0004	207	3	0	1	0	2	0	copy fasta	MGMT	chr10	129462241	129775983
MGP_chr12_14875864_14890854	1/1	a0001	103	257	44	37	143	5	26	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	a0002	103	122	45	29	29	6	13	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	a0003	103	13	0	0	8	0	5	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	a0004	103	3	0	2	0	1	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	a0005	103	2	0	2	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	a0006	103	1	1	0	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGRN1_chr16_4619826_4695972	1/1	a0001	576	331	88	56	130	16	39	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	a0002	168	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	a0003	576	1	0	0	0	0	1	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	a0004	576	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGST1_chr12_16342645_16369410	1/1	a0001	155	461	94	76	223	18	48	copy fasta	MGST1	chr12	16342645	16369410
MGST1_chr12_16342645_16369410	0/0	a0002	155	1	0	0	1	0	0	copy fasta	MGST1	chr12	16342645	16369410
MGST2_chr4_139660819_139709243	1/1	a0001	147	439	92	82	204	16	43	copy fasta	MGST2	chr4	139660819	139709243
MGST2_chr4_139660819_139709243	0/0	a0002	147	1	0	0	0	0	1	copy fasta	MGST2	chr4	139660819	139709243
MGST3_chr1_165626234_165661136	1/1	a0001	152	345	98	75	112	18	40	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	a0002	152	1	0	1	0	0	0	copy fasta	MGST3	chr1	165626234	165661136
MIA2_chr14_39228915_39355694	0/0	a0001	1412	82	14	15	44	3	6	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0002	1412	67	0	8	54	1	4	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/1	a0003	1412	38	10	12	7	4	4	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	1/0	a0004	1412	27	10	9	1	3	3	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0005	1412	22	2	7	9	2	2	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0006	1412	20	0	2	8	1	9	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0007	1412	15	9	1	4	0	1	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0008	1412	14	1	0	10	0	3	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0009	1412	12	11	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0010	1412	10	5	2	2	0	1	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0011	1412	9	9	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0012	1412	8	8	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0013	1412	8	0	6	2	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0014	1412	7	0	1	2	0	4	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0015	1412	4	4	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0016	1412	3	3	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0017	1412	2	0	0	2	0	0	copy fasta	MIA2	chr14	39228915	39355694