JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MIA2_chr14_39228915_39355694	0/0	a0018	1412	2	0	1	0	1	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0019	1412	2	1	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0020	1412	1	0	0	1	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0021	1412	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0022	1412	1	0	0	1	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0023	1412	1	0	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0024	1412	1	0	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0025	1412	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0026	1412	1	0	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0027	1412	1	0	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0028	1412	1	0	0	0	1	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0029	1412	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0030	1412	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0031	1412	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0032	1412	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0033	1412	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0034	1412	1	0	0	1	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	a0035	1412	1	0	0	0	0	1	copy fasta	MIA2	chr14	39228915	39355694
MIA3_chr1_222613097_222673007	0/1	a0001	1907	217	50	31	96	12	27	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0002	1907	115	26	25	53	1	10	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0003	1907	11	2	2	5	0	2	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0004	1907	7	7	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0005	1907	3	0	0	3	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0006	1907	2	1	1	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0007	1907	1	0	0	0	0	1	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0008	1907	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0009	1907	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0010	1907	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0011	1907	1	0	1	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0012	1907	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0013	1907	1	0	0	0	1	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0014	1907	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0015	1907	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0016	1907	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0017	1907	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0018	1907	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0019	1907	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	1/0	a0020	1907	1	0	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	a0021	1907	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA_chr19_40770521_40782490	0/0	a0000	0	1	0	0	1	0	0	copy fasta	MIA	chr19	40770521	40782490
MIA_chr19_40770521_40782490	1/1	a0001	131	402	89	60	193	16	42	copy fasta	MIA	chr19	40770521	40782490
MIA_chr19_40770521_40782490	0/0	a0002	131	1	1	0	0	0	0	copy fasta	MIA	chr19	40770521	40782490
MIB1_chr18_21735792_21875953	1/1	a0001	1006	307	89	64	120	4	28	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	a0002	1006	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB2_chr1_1610500_1635605	1/1	a0001	955	364	81	68	155	18	40	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0002	953	26	9	1	14	0	2	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0003	955	6	0	0	6	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0004	611	4	4	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0005	955	2	0	0	2	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0006	955	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605