JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MIB2_chr1_1610500_1635605	0/0	a0007	955	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0008	955	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0009	955	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0010	955	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0011	937	1	0	1	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0012	953	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0013	953	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0014	953	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	a0015	152	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MICAL1_chr6_109439062_109460772	1/1	a0001	1067	173	21	40	89	5	16	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0002	1067	142	12	22	82	6	20	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0003	1067	50	12	8	25	3	2	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0004	1067	43	41	2	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0005	1067	3	3	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0006	1067	3	0	3	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0007	1067	2	0	0	0	0	2	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0008	1067	2	2	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0009	30	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0010	1067	1	0	1	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0011	1067	1	0	1	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0012	1067	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0013	456	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0014	1067	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0015	1067	1	1	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0016	1067	1	0	0	0	0	1	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0017	1067	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0018	1067	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0019	1067	1	0	1	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0020	1067	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0021	1067	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0022	1067	1	1	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0023	1067	1	0	0	0	0	1	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	a0024	1067	1	1	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL2_chr11_12105590_12268785	1/1	a0001	1124	304	74	60	125	10	33	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0002	1124	10	1	1	8	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0003	1124	8	8	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0004	1124	6	0	0	6	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0005	1124	5	0	1	0	0	4	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0006	1124	4	4	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0007	1124	4	0	0	4	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0008	1124	2	0	0	2	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0009	1124	2	2	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0010	1124	2	0	0	1	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0011	1124	1	0	0	0	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0012	1124	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0013	1124	1	0	0	0	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0014	1124	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0015	1124	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0016	1124	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0017	1124	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785